HL_5JUT_122

3D structure

PDB id

5JUT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure IV (almost non-rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

UUAGAGAAGGGGGCAACUCCAUCUCAGA

Length

28 nucleotides

Bulged bases

5JUT|1|A|G|1698, 5JUT|1|A|G|1699, 5JUT|1|A|C|1700, 5JUT|1|A|A|1701, 5JUT|1|A|A|1702, 5JUT|1|A|C|1703, 5JUT|1|A|U|1704, 5JUT|1|A|C|1705, 5JUT|1|A|C|1706

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5JUT|1|A|U|1687
5JUT|1|A|U|1688
5JUT|1|A|A|1689
5JUT|1|A|G|1690
5JUT|1|A|A|1691
5JUT|1|A|G|1692
5JUT|1|A|A|1693
5JUT|1|A|A|1694
5JUT|1|A|G|1695
5JUT|1|A|G|1696
5JUT|1|A|G|1697
5JUT|1|A|G|1698
5JUT|1|A|G|1699
5JUT|1|A|C|1700
5JUT|1|A|A|1701
5JUT|1|A|A|1702
5JUT|1|A|C|1703
5JUT|1|A|U|1704
5JUT|1|A|C|1705
5JUT|1|A|C|1706
5JUT|1|A|A|1707
5JUT|1|A|U|1708
5JUT|1|A|C|1709
5JUT|1|A|U|1710
5JUT|1|A|C|1711
5JUT|1|A|A|1712
5JUT|1|A|G|1713
5JUT|1|A|A|1714

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain DB

eS6 (yeast S6)