HL_5JUT_123
3D structure
- PDB id
- 5JUT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure IV (almost non-rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- ACAUAGAGGGUGUAGAAUAAGUGGGAGCUUCGGCGCCAGUGAAAUACCACUACCUUUAUAGU
- Length
- 62 nucleotides
- Bulged bases
- 5JUT|1|B|U|2453, 5JUT|1|B|G|2454, 5JUT|1|B|U|2455, 5JUT|1|B|A|2458, 5JUT|1|B|U|2460, 5JUT|1|B|A|2462, 5JUT|1|B|G|2463, 5JUT|1|B|U|2472, 5JUT|1|B|C|2473, 5JUT|1|B|C|2492, 5JUT|1|B|U|2498, 5JUT|1|B|U|2501
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5JUT|1|B|A|2443
5JUT|1|B|C|2444
5JUT|1|B|A|2445
5JUT|1|B|U|2446
5JUT|1|B|A|2447
5JUT|1|B|G|2448
5JUT|1|B|A|2449
5JUT|1|B|G|2450
5JUT|1|B|G|2451
5JUT|1|B|G|2452
5JUT|1|B|U|2453
5JUT|1|B|G|2454
5JUT|1|B|U|2455
5JUT|1|B|A|2456
5JUT|1|B|G|2457
5JUT|1|B|A|2458
5JUT|1|B|A|2459
5JUT|1|B|U|2460
5JUT|1|B|A|2461
5JUT|1|B|A|2462
5JUT|1|B|G|2463
5JUT|1|B|U|2464
5JUT|1|B|G|2465
5JUT|1|B|G|2466
5JUT|1|B|G|2467
5JUT|1|B|A|2468
5JUT|1|B|G|2469
5JUT|1|B|C|2470
5JUT|1|B|U|2471
5JUT|1|B|U|2472
5JUT|1|B|C|2473
5JUT|1|B|G|2474
5JUT|1|B|G|2475
5JUT|1|B|C|2476
5JUT|1|B|G|2477
5JUT|1|B|C|2478
5JUT|1|B|C|2479
5JUT|1|B|A|2480
5JUT|1|B|G|2481
5JUT|1|B|U|2482
5JUT|1|B|G|2483
5JUT|1|B|A|2484
5JUT|1|B|A|2485
5JUT|1|B|A|2486
5JUT|1|B|U|2487
5JUT|1|B|A|2488
5JUT|1|B|C|2489
5JUT|1|B|C|2490
5JUT|1|B|A|2491
5JUT|1|B|C|2492
5JUT|1|B|U|2493
5JUT|1|B|A|2494
5JUT|1|B|C|2495
5JUT|1|B|C|2496
5JUT|1|B|U|2497
5JUT|1|B|U|2498
5JUT|1|B|U|2499
5JUT|1|B|A|2500
5JUT|1|B|U|2501
5JUT|1|B|A|2502
5JUT|1|B|G|2503
5JUT|1|B|U|2504
Current chains
- Chain B
- 25S ribosomal RNA
Nearby chains
- Chain E
- uL1 (yeast L1)
- Chain EC
- IRES
- Chain L
- eL8 (yeast L8)
- Chain NA
- eL36 (yeast L36)
Coloring options: