HL_5JUU_004

3D structure

PDB id

5JUU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CCUUUG

Length

6 nucleotides

Bulged bases

5JUU|1|A|U|194

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5JUU_004 not in the Motif Atlas

Geometric match to HL_8C3A_039

Geometric discrepancy: 0.2353

The information below is about HL_8C3A_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

5JUU|1|A|C|190
5JUU|1|A|C|191
5JUU|1|A|U|192
5JUU|1|A|U|193
5JUU|1|A|U|194
5JUU|1|A|G|195

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain FB

eS8 (yeast S8)