HL_5JUU_010
3D structure
- PDB id
- 5JUU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- CCUGAGAAACGG
- Length
- 12 nucleotides
- Bulged bases
- 5JUU|1|A|C|402, 5JUU|1|A|G|403
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5JUU_010 not in the Motif Atlas
- Homologous match to HL_4V88_195
- Geometric discrepancy: 0.1398
- The information below is about HL_4V88_195
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_06226.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
5JUU|1|A|C|393
5JUU|1|A|C|394
5JUU|1|A|U|395
5JUU|1|A|G|396
5JUU|1|A|A|397
5JUU|1|A|G|398
5JUU|1|A|A|399
5JUU|1|A|A|400
5JUU|1|A|A|401
5JUU|1|A|C|402
5JUU|1|A|G|403
5JUU|1|A|G|404
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain BB
- eS4 (yeast S4)
- Chain DB
- eS6 (yeast S6)
- Chain FB
- eS8 (yeast S8)
- Chain VB
- eS24 (yeast S24)
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