HL_5JUU_022
3D structure
- PDB id
- 5JUU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- GAUCAGAUACC
- Length
- 11 nucleotides
- Bulged bases
- 5JUU|1|A|U|1004
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5JUU_022 not in the Motif Atlas
- Homologous match to HL_4V88_208
- Geometric discrepancy: 0.2481
- The information below is about HL_4V88_208
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75293.2
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 14
Unit IDs
5JUU|1|A|G|997
5JUU|1|A|A|998
5JUU|1|A|U|999
5JUU|1|A|C|1000
5JUU|1|A|A|1001
5JUU|1|A|G|1002
5JUU|1|A|A|1003
5JUU|1|A|U|1004
5JUU|1|A|A|1005
5JUU|1|A|C|1006
5JUU|1|A|C|1007
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain B
- Large subunit ribosomal RNA; LSU rRNA
- Chain EC
- IRES
- Chain LB
- uS11 (yeast S14)
- Chain XB
- eS26 (yeast S26)
Coloring options: