HL_5JUU_024

3D structure

PDB id

5JUU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

AGAAAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5JUU_024 not in the Motif Atlas

Homologous match to HL_4V88_210

Geometric discrepancy: 0.182

The information below is about HL_4V88_210

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

5JUU|1|A|A|1084
5JUU|1|A|G|1085
5JUU|1|A|A|1086
5JUU|1|A|A|1087
5JUU|1|A|A|1088
5JUU|1|A|U|1089

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain TB

uS8 (yeast S22)

Chain XB

eS26 (yeast S26)

Chain ZA

uS5 (yeast S2)