HL_5JUU_035

3D structure

PDB id

5JUU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GAGAAGGGCAUCUCUCCAUCU*C

Length

22 nucleotides

Bulged bases

5JUU|1|A|G|1697, 5JUU|1|A|U|1704, 5JUU|1|A|C|1705

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5JUU_035 not in the Motif Atlas

Geometric match to HL_8C3A_039

Geometric discrepancy: 0.3418

The information below is about HL_8C3A_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

5JUU|1|A|G|1690
5JUU|1|A|A|1691
5JUU|1|A|G|1692
5JUU|1|A|A|1693
5JUU|1|A|A|1694
5JUU|1|A|G|1695
5JUU|1|A|G|1696
5JUU|1|A|G|1697
5JUU|1|A|C|1706
5JUU|1|A|A|1707
5JUU|1|A|U|1708
5JUU|1|A|C|1709
5JUU|1|A|U|1710
5JUU|1|A|C|1711
5JUU|1|A|U|1704
5JUU|1|A|C|1705
5JUU|1|A|C|1706
5JUU|1|A|A|1707
5JUU|1|A|U|1708
5JUU|1|A|C|1709
5JUU|1|A|U|1710
*
5JUU|1|A|C|1711

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain DB

eS6 (yeast S6)