HL_5JUU_037
3D structure
- PDB id
- 5JUU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- UAAGCAUA
- Length
- 8 nucleotides
- Bulged bases
- 5JUU|1|B|A|40
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5JUU_037 not in the Motif Atlas
- Geometric match to HL_4WF9_006
- Geometric discrepancy: 0.2102
- The information below is about HL_4WF9_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_30068.2
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 15
Unit IDs
5JUU|1|B|U|38
5JUU|1|B|A|39
5JUU|1|B|A|40
5JUU|1|B|G|41
5JUU|1|B|C|42
5JUU|1|B|A|43
5JUU|1|B|U|44
5JUU|1|B|A|45
Current chains
- Chain B
- 25S ribosomal RNA
Nearby chains
- Chain FA
- uL15 (yeast L28)
- Chain Q
- eL13 (yeast L13)
- Chain S
- eL15 (yeast L15)
- Chain TA
- eL42 (yeast L42)
Coloring options: