HL_5JUU_040

3D structure

PDB id

5JUU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CUUCG

Length

5 nucleotides

Bulged bases

5JUU|1|B|U|133, 5JUU|1|B|C|135

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5JUU_040 not in the Motif Atlas

Homologous match to HL_8C3A_004

Geometric discrepancy: 0.2451

The information below is about HL_8C3A_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_86929.1

Basepair signature

cWW-F

Number of instances in this motif group

9

Unit IDs

5JUU|1|B|C|132
5JUU|1|B|U|133
5JUU|1|B|U|134
5JUU|1|B|C|135
5JUU|1|B|G|136

Current chains

Chain B

25S ribosomal RNA

Nearby chains

Chain MA

uL29 (yeast L35)

Chain S

eL15 (yeast L15)