HL_5JUU_043

3D structure

PDB id

5JUU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GUGAGAAUC

Length

9 nucleotides

Bulged bases

5JUU|1|B|G|218, 5JUU|1|B|A|219, 5JUU|1|B|G|220

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5JUU_043 not in the Motif Atlas

Homologous match to HL_8C3A_007

Geometric discrepancy: 0.2128

The information below is about HL_8C3A_007

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_08002.12

Basepair signature

cWW-cWW-F-tWH

Number of instances in this motif group

16

Unit IDs

5JUU|1|B|G|216
5JUU|1|B|U|217
5JUU|1|B|G|218
5JUU|1|B|A|219
5JUU|1|B|G|220
5JUU|1|B|A|221
5JUU|1|B|A|222
5JUU|1|B|U|223
5JUU|1|B|C|224

Current chains

Chain B

25S ribosomal RNA

Nearby chains

Chain C

5.8S ribosomal RNA; 5.8S rRNA

Chain DA

uL24 (yeast L26)

Chain H

uL4 (yeast L4)