HL_5JUU_049

3D structure

PDB id

5JUU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CCUCGG

Length

6 nucleotides

Bulged bases

5JUU|1|B|U|545, 5JUU|1|B|C|546

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5JUU_049 not in the Motif Atlas

Homologous match to HL_5TBW_012

Geometric discrepancy: 0.5412

The information below is about HL_5TBW_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.1

Basepair signature

cWW-F-F

Number of instances in this motif group

7

Unit IDs

5JUU|1|B|C|543
5JUU|1|B|C|544
5JUU|1|B|U|545
5JUU|1|B|C|546
5JUU|1|B|G|547
5JUU|1|B|G|548

Current chains

Chain B

25S ribosomal RNA

Nearby chains