HL_5JUU_064
3D structure
- PDB id
- 5JUU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- CAUGGAAGUCG
- Length
- 11 nucleotides
- Bulged bases
- 5JUU|1|B|A|1245
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5JUU_064 not in the Motif Atlas
- Homologous match to HL_8C3A_027
- Geometric discrepancy: 0.4442
- The information below is about HL_8C3A_027
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_19210.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
5JUU|1|B|C|1239
5JUU|1|B|A|1240
5JUU|1|B|U|1241
5JUU|1|B|G|1242
5JUU|1|B|G|1243
5JUU|1|B|A|1244
5JUU|1|B|A|1245
5JUU|1|B|G|1246
5JUU|1|B|U|1247
5JUU|1|B|C|1248
5JUU|1|B|G|1249
Current chains
- Chain B
- 25S ribosomal RNA
Nearby chains
- Chain DC
- yeast eEF2
- Chain P
- uL11 (yeast L12)
Coloring options: