HL_5JUU_068

3D structure

PDB id

5JUU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

AUGAGAACU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5JUU_068 not in the Motif Atlas

Homologous match to HL_5TBW_031

Geometric discrepancy: 0.1907

The information below is about HL_5TBW_031

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_43993.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

5JUU|1|B|A|1462
5JUU|1|B|U|1463
5JUU|1|B|G|1464
5JUU|1|B|A|1465
5JUU|1|B|G|1466
5JUU|1|B|A|1467
5JUU|1|B|A|1468
5JUU|1|B|C|1469
5JUU|1|B|U|1470

Current chains

Chain B

25S ribosomal RNA

Nearby chains

Chain IA

eL31 (yeast L31)

Chain U

uL22 (yeast L17)

Chain W

eL19 (yeast L19)