HL_5JUU_076

3D structure

PDB id

5JUU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CACCUUUG

Length

8 nucleotides

Bulged bases

5JUU|1|B|C|1762, 5JUU|1|B|U|1764

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5JUU_076 not in the Motif Atlas

Geometric match to HL_5TBW_006

Geometric discrepancy: 0.1362

The information below is about HL_5TBW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

5JUU|1|B|C|1759
5JUU|1|B|A|1760
5JUU|1|B|C|1761
5JUU|1|B|C|1762
5JUU|1|B|U|1763
5JUU|1|B|U|1764
5JUU|1|B|U|1765
5JUU|1|B|G|1766

Current chains

Chain B

25S ribosomal RNA

Nearby chains

Chain W

eL19 (yeast L19)

Chain Z

eL22 (yeast L22)