HL_5JUU_099
3D structure
- PDB id
- 5JUU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- CGUUCAUAG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5JUU_099 not in the Motif Atlas
- Homologous match to HL_5TBW_061
- Geometric discrepancy: 0.2601
- The information below is about HL_5TBW_061
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_82661.1
- Basepair signature
- cWW-tSH-F-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
5JUU|1|B|C|2840
5JUU|1|B|G|2841
5JUU|1|B|U|2842
5JUU|1|B|U|2843
5JUU|1|B|C|2844
5JUU|1|B|A|2845
5JUU|1|B|U|2846
5JUU|1|B|A|2847
5JUU|1|B|G|2848
Current chains
- Chain B
- 25S ribosomal RNA
Nearby chains
- Chain DC
- yeast eEF2
- Chain M
- uL6 (yeast L9)
- Chain N
- uL16 (yeast L10)
- Chain RA
- eL40 (yeast L40)
Coloring options: