HL_5JUU_104

3D structure

PDB id

5JUU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

UGAUCA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5JUU_104 not in the Motif Atlas

Homologous match to HL_8C3A_067

Geometric discrepancy: 0.2361

The information below is about HL_8C3A_067

Detailed Annotation

Ribsomal LSU H95

Broad Annotation

Ribsomal LSU H95

Motif group

HL_65794.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

11

Unit IDs

5JUU|1|B|U|3068
5JUU|1|B|G|3069
5JUU|1|B|A|3070
5JUU|1|B|U|3071
5JUU|1|B|C|3072
5JUU|1|B|A|3073

Current chains

Chain B

25S ribosomal RNA

Nearby chains

Chain IA

eL31 (yeast L31)

Chain W

eL19 (yeast L19)

Chain Z

eL22 (yeast L22)