HL_5JUU_109

3D structure

PDB id

5JUU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CUUG

Length

4 nucleotides

Bulged bases

5JUU|1|B|U|3351

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5JUU_109 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.3686

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81100.2

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

5JUU|1|B|C|3350
5JUU|1|B|U|3351
5JUU|1|B|U|3352
5JUU|1|B|G|3353

Current chains

Chain B

25S ribosomal RNA

Nearby chains

Chain FB

eS8 (yeast S8)