HL_5JUU_111

3D structure

PDB id

5JUU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CACAUUG

Length

7 nucleotides

Bulged bases

5JUU|1|C|A|111, 5JUU|1|C|U|113

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5JUU_111 not in the Motif Atlas

Homologous match to HL_5TBW_075

Geometric discrepancy: 0.4636

The information below is about HL_5TBW_075

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_22523.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

5JUU|1|C|C|108
5JUU|1|C|A|109
5JUU|1|C|C|110
5JUU|1|C|A|111
5JUU|1|C|U|112
5JUU|1|C|U|113
5JUU|1|C|G|114

Current chains

Chain C

5.8S ribosomal RNA

Nearby chains

Chain B

Large subunit ribosomal RNA; LSU rRNA

Chain CA

uL23 (yeast L25)

Chain OA

eL37 (yeast L37)

Chain QA

eL39 (yeast L39)