HL_5JUU_118
3D structure
- PDB id
- 5JUU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- UUGGGCAA
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5JUU_118 not in the Motif Atlas
- Geometric match to HL_4LX6_002
- Geometric discrepancy: 0.3961
- The information below is about HL_4LX6_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_31585.4
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 20
Unit IDs
5JUU|1|EC|U|6903
5JUU|1|EC|U|6904
5JUU|1|EC|G|6905
5JUU|1|EC|G|6906
5JUU|1|EC|G|6907
5JUU|1|EC|C|6908
5JUU|1|EC|A|6909
5JUU|1|EC|A|6910
Current chains
- Chain EC
- IRES
Nearby chains
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain B
- Large subunit ribosomal RNA; LSU rRNA
- Chain DC
- yeast eEF2
- Chain NB
- uS9 (yeast S16)
Coloring options: