HL_5JVH_009

3D structure

PDB id

5JVH (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure large ribosomal subunit (50S) of Deinococcus radiodurans in complex with evernimicin

Experimental method

X-RAY DIFFRACTION

Resolution

3.58 Å

Loop

Sequence

CUGGAAAG

Length

8 nucleotides

Bulged bases

5JVH|1|X|A|322

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5JVH_009 not in the Motif Atlas

Homologous match to HL_7A0S_010

Geometric discrepancy: 0.1058

The information below is about HL_7A0S_010

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_13999.4

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

24

Unit IDs

5JVH|1|X|C|316
5JVH|1|X|U|317
5JVH|1|X|G|318
5JVH|1|X|G|319
5JVH|1|X|A|320
5JVH|1|X|A|321
5JVH|1|X|A|322
5JVH|1|X|G|323

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain P

50S ribosomal protein L22

Chain R

50S ribosomal protein L24