HL_5JVH_013

3D structure

PDB id

5JVH (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure large ribosomal subunit (50S) of Deinococcus radiodurans in complex with evernimicin

Experimental method

X-RAY DIFFRACTION

Resolution

3.58 Å

Loop

Sequence

GGACCACC

Length

8 nucleotides

Bulged bases

5JVH|1|X|G|424

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5JVH_013 not in the Motif Atlas

Homologous match to HL_7A0S_014

Geometric discrepancy: 0.1219

The information below is about HL_7A0S_014

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

5JVH|1|X|G|423
5JVH|1|X|G|424
5JVH|1|X|A|425
5JVH|1|X|C|426
5JVH|1|X|C|427
5JVH|1|X|A|428
5JVH|1|X|C|429
5JVH|1|X|C|430

Current chains

Chain X

23S ribosomal RNA

Nearby chains