HL_5JVH_031

3D structure

PDB id

5JVH (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure large ribosomal subunit (50S) of Deinococcus radiodurans in complex with evernimicin

Experimental method

X-RAY DIFFRACTION

Resolution

3.58 Å

Loop

Sequence

GUGAGAAUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5JVH_031 not in the Motif Atlas

Homologous match to HL_7A0S_032

Geometric discrepancy: 0.0931

The information below is about HL_7A0S_032

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.4

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

137

Unit IDs

5JVH|1|X|G|1294
5JVH|1|X|U|1295
5JVH|1|X|G|1296
5JVH|1|X|A|1297
5JVH|1|X|G|1298
5JVH|1|X|A|1299
5JVH|1|X|A|1300
5JVH|1|X|U|1301
5JVH|1|X|C|1302

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain K

50S ribosomal protein L17

Chain P

50S ribosomal protein L22

Chain Z

50S ribosomal protein L32