HL_5JVH_040

3D structure

PDB id

5JVH (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure large ribosomal subunit (50S) of Deinococcus radiodurans in complex with evernimicin

Experimental method

X-RAY DIFFRACTION

Resolution

3.58 Å

Loop

Sequence

GUCAAUGC

Length

8 nucleotides

Bulged bases

5JVH|1|X|U|1651

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5JVH_040 not in the Motif Atlas

Homologous match to HL_7A0S_041

Geometric discrepancy: 0.2481

The information below is about HL_7A0S_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_07145.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

5JVH|1|X|G|1646
5JVH|1|X|U|1647
5JVH|1|X|C|1648
5JVH|1|X|A|1649
5JVH|1|X|A|1650
5JVH|1|X|U|1651
5JVH|1|X|G|1652
5JVH|1|X|C|1653

Current chains

Chain X

23S ribosomal RNA

Nearby chains