HL_5JVH_044

3D structure

PDB id

5JVH (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure large ribosomal subunit (50S) of Deinococcus radiodurans in complex with evernimicin

Experimental method

X-RAY DIFFRACTION

Resolution

3.58 Å

Loop

Sequence

GUUUACCAAAAUC

Length

13 nucleotides

Bulged bases

5JVH|1|X|A|1771, 5JVH|1|X|C|1772, 5JVH|1|X|C|1773, 5JVH|1|X|A|1777

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5JVH_044 not in the Motif Atlas

Homologous match to HL_7A0S_045

Geometric discrepancy: 0.1377

The information below is about HL_7A0S_045

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50951.2

Basepair signature

cWW-F-F-tWH-F-F-F

Number of instances in this motif group

6

Unit IDs

5JVH|1|X|G|1767
5JVH|1|X|U|1768
5JVH|1|X|U|1769
5JVH|1|X|U|1770
5JVH|1|X|A|1771
5JVH|1|X|C|1772
5JVH|1|X|C|1773
5JVH|1|X|A|1774
5JVH|1|X|A|1775
5JVH|1|X|A|1776
5JVH|1|X|A|1777
5JVH|1|X|U|1778
5JVH|1|X|C|1779

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain A

50S ribosomal protein L2