HL_5JVH_058

3D structure

PDB id

5JVH (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure large ribosomal subunit (50S) of Deinococcus radiodurans in complex with evernimicin

Experimental method

X-RAY DIFFRACTION

Resolution

3.58 Å

Loop

Sequence

CGUGUGGAAG

Length

10 nucleotides

Bulged bases

5JVH|1|X|U|2385

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5JVH_058 not in the Motif Atlas

Homologous match to HL_7A0S_058

Geometric discrepancy: 0.1073

The information below is about HL_7A0S_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_51853.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

5JVH|1|X|C|2383
5JVH|1|X|G|2384
5JVH|1|X|U|2385
5JVH|1|X|G|2386
5JVH|1|X|U|2387
5JVH|1|X|G|2388
5JVH|1|X|G|2389
5JVH|1|X|A|2390
5JVH|1|X|A|2391
5JVH|1|X|G|2392

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain I

50S ribosomal protein L15

Chain U

50S ribosomal protein L28