HL_5JVH_060

3D structure

PDB id

5JVH (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure large ribosomal subunit (50S) of Deinococcus radiodurans in complex with evernimicin

Experimental method

X-RAY DIFFRACTION

Resolution

3.58 Å

Loop

Sequence

UGAAGAAG

Length

8 nucleotides

Bulged bases

5JVH|1|X|G|2508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5JVH_060 not in the Motif Atlas

Homologous match to HL_7RQB_061

Geometric discrepancy: 0.1315

The information below is about HL_7RQB_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91104.1

Basepair signature

cWW-F

Number of instances in this motif group

12

Unit IDs

5JVH|1|X|U|2507
5JVH|1|X|G|2508
5JVH|1|X|A|2509
5JVH|1|X|A|2510
5JVH|1|X|G|2511
5JVH|1|X|A|2512
5JVH|1|X|A|2513
5JVH|1|X|G|2514

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L6