HL_5JVH_065

3D structure

PDB id

5JVH (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure large ribosomal subunit (50S) of Deinococcus radiodurans in complex with evernimicin

Experimental method

X-RAY DIFFRACTION

Resolution

3.58 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

5JVH|1|X|C|2735

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5JVH_065 not in the Motif Atlas

Homologous match to HL_7A0S_065

Geometric discrepancy: 0.1546

The information below is about HL_7A0S_065

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53269.3

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

11

Unit IDs

5JVH|1|X|C|2725
5JVH|1|X|U|2726
5JVH|1|X|G|2727
5JVH|1|X|A|2728
5JVH|1|X|A|2729
5JVH|1|X|A|2730
5JVH|1|X|G|2731
5JVH|1|X|C|2732
5JVH|1|X|A|2733
5JVH|1|X|U|2734
5JVH|1|X|C|2735
5JVH|1|X|U|2736
5JVH|1|X|A|2737
5JVH|1|X|A|2738
5JVH|1|X|G|2739

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L6

Chain G

50S ribosomal protein L13