HL_5K0Y_001
3D structure
- PDB id
- 5K0Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- m48S late-stage initiation complex, purified from rabbit reticulocytes lysates, displaying eIF2 ternary complex and eIF3 i and g subunits relocated to the intersubunit face
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.8 Å
Loop
- Sequence
- GUUGAUCCUGC
- Length
- 11 nucleotides
- Bulged bases
- 5K0Y|1|A|U|9
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5K0Y_001 not in the Motif Atlas
- Homologous match to HL_4V88_186
- Geometric discrepancy: 0.1604
- The information below is about HL_4V88_186
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_89881.2
- Basepair signature
- cWW-tHW-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
5K0Y|1|A|G|7
5K0Y|1|A|U|8
5K0Y|1|A|U|9
5K0Y|1|A|G|10
5K0Y|1|A|A|11
5K0Y|1|A|U|12
5K0Y|1|A|C|13
5K0Y|1|A|C|14
5K0Y|1|A|U|15
5K0Y|1|A|G|16
5K0Y|1|A|C|17
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain F
- mRNA
- Chain Q
- ribosomal protein uS12
- Chain c
- ribosomal protein uS5
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