5K0Y Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_5K0Y_001 | No text annotation | ||
| HL_5K0Y_002 | No text annotation | ||
| HL_5K0Y_041 | GNRA with extra cWW | ||
| HL_5K0Y_003 | GNRA related | ||
| HL_5K0Y_004 | No text annotation | ||
| HL_5K0Y_005 | No text annotation | ||
| HL_5K0Y_006 | T-loop with 1 bulged base | ||
| HL_5K0Y_007 | No text annotation | ||
| HL_5K0Y_008 | No text annotation | ||
| HL_5K0Y_009 | No text annotation | ||
| HL_5K0Y_010 | No text annotation | ||
| HL_5K0Y_011 | UNCG | ||
| HL_5K0Y_012 | No text annotation | ||
| HL_5K0Y_013 | GNRA | ||
| HL_5K0Y_014 | No text annotation | ||
| HL_5K0Y_015 | GNRA variation | ||
| HL_5K0Y_016 | No text annotation | ||
| HL_5K0Y_042 | No text annotation | ||
| HL_5K0Y_017 | No text annotation | ||
| HL_5K0Y_018 | No text annotation | ||
| HL_5K0Y_019 | No text annotation | ||
| HL_5K0Y_020 | Pseudoknot geometry | ||
| HL_5K0Y_021 | No text annotation | ||
| HL_5K0Y_022 | GNRA | ||
| HL_5K0Y_023 | No text annotation | ||
| HL_5K0Y_024 | No text annotation | ||
| HL_5K0Y_025 | GNRA | ||
| HL_5K0Y_026 | GNRA | ||
| HL_5K0Y_027 | No text annotation | ||
| HL_5K0Y_028 | No text annotation | ||
| HL_5K0Y_044 | GNRA wlth extra near cWW | ||
| HL_5K0Y_029 | GNRA | ||
| HL_5K0Y_030 | No text annotation | ||
| HL_5K0Y_031 | GNRA | ||
| HL_5K0Y_032 | GNRA | ||
| HL_5K0Y_033 | GNRA | ||
| HL_5K0Y_034 | No text annotation | ||
| HL_5K0Y_035 | No text annotation | ||
| HL_5K0Y_036 | No text annotation | ||
| HL_5K0Y_037 | GNRA variation | ||
| HL_5K0Y_038 | No text annotation | ||
| HL_5K0Y_039 | No text annotation | ||
| HL_5K0Y_043 | tRNA anticodon loop | ||
| HL_5K0Y_040 | T-loop with 2 stacked bulged bases |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_5K0Y_001 | Isolated non-canonical cWW pair | ||
| IL_5K0Y_002 | Double sheared | ||
| IL_5K0Y_003 | No text annotation | ||
| IL_5K0Y_004 | Minor groove platform | ||
| IL_5K0Y_005 | No text annotation | ||
| IL_5K0Y_110 | No text annotation | ||
| IL_5K0Y_006 | No text annotation | ||
| IL_5K0Y_007 | Isolated non-canonical cWW pair | ||
| IL_5K0Y_093 | Triple non-canonical cWW pairs | ||
| IL_5K0Y_008 | Isolated non-canonical cWW pair | ||
| IL_5K0Y_009 | Multiple bulged bases | ||
| IL_5K0Y_010 | No text annotation | ||
| IL_5K0Y_011 | tWH-tWH-tHW-tHW | ||
| IL_5K0Y_012 | No text annotation | ||
| IL_5K0Y_094 | No text annotation | ||
| IL_5K0Y_013 | Isolated non-canonical cWW pair | ||
| IL_5K0Y_014 | Tandem non-canonical cWW pairs | ||
| IL_5K0Y_095 | No text annotation | ||
| IL_5K0Y_111 | Single stack bend | ||
| IL_5K0Y_015 | No text annotation | ||
| IL_5K0Y_016 | Single bulged A | ||
| IL_5K0Y_017 | Isolated cWH basepair | ||
| IL_5K0Y_018 | Kink-turn with non-sequential stacking | ||
| IL_5K0Y_019 | No text annotation | ||
| IL_5K0Y_020 | No text annotation | ||
| IL_5K0Y_021 | Isolated cWH basepair | ||
| IL_5K0Y_022 | Isolated near basepair | ||
| IL_5K0Y_023 | Single bulged U | ||
| IL_5K0Y_112 | C-loop | ||
| IL_5K0Y_024 | C-loop with extra cWW pair | ||
| IL_5K0Y_113 | Single bulged G | ||
| IL_5K0Y_096 | No text annotation | ||
| IL_5K0Y_114 | No text annotation | ||
| IL_5K0Y_025 | Single stack bend | ||
| IL_5K0Y_097 | No text annotation | ||
| IL_5K0Y_026 | No text annotation | ||
| IL_5K0Y_115 | No text annotation | ||
| IL_5K0Y_027 | Double sheared | ||
| IL_5K0Y_028 | No text annotation | ||
| IL_5K0Y_029 | Kink-turn related | ||
| IL_5K0Y_030 | Isolated non-canonical cWW pair | ||
| IL_5K0Y_098 | No text annotation | ||
| IL_5K0Y_031 | Isolated non-canonical cWW pair | ||
| IL_5K0Y_032 | tSH-tHW-tHS | ||
| IL_5K0Y_033 | Minor groove platform | ||
| IL_5K0Y_034 | No text annotation | ||
| IL_5K0Y_035 | Major groove minor groove platform with extra cWW | ||
| IL_5K0Y_116 | No text annotation | ||
| IL_5K0Y_036 | Tandem non-canonical cWW pairs | ||
| IL_5K0Y_037 | No text annotation | ||
| IL_5K0Y_038 | Single stack bend | ||
| IL_5K0Y_039 | No text annotation | ||
| IL_5K0Y_040 | Major groove platform; stack outside cWW | ||
| IL_5K0Y_099 | Single bulged U | ||
| IL_5K0Y_041 | Single bulged G, near cWW | ||
| IL_5K0Y_042 | Tandem non-canonical cWW pairs | ||
| IL_5K0Y_043 | Tandem non-canonical cWW pairs | ||
| IL_5K0Y_044 | Tandem non-canonical cWW pairs | ||
| IL_5K0Y_045 | Kink-turn | ||
| IL_5K0Y_046 | Other IL | ||
| IL_5K0Y_047 | tSH-tHW-tHS | ||
| IL_5K0Y_048 | No text annotation | ||
| IL_5K0Y_049 | Tandem non-canonical cWW pairs | ||
| IL_5K0Y_100 | No text annotation | ||
| IL_5K0Y_050 | Isolated non-canonical cWW pair | ||
| IL_5K0Y_051 | Single bulged U | ||
| IL_5K0Y_052 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | ||
| IL_5K0Y_053 | Isolated non-canonical cWW pair | ||
| IL_5K0Y_117 | Single bulged A | ||
| IL_5K0Y_054 | Single bulged G | ||
| IL_5K0Y_055 | No text annotation | ||
| IL_5K0Y_101 | C-loop | ||
| IL_5K0Y_056 | Isolated non-canonical cWW pair | ||
| IL_5K0Y_057 | Minor groove platform | ||
| IL_5K0Y_058 | Single stack bend | ||
| IL_5K0Y_059 | No text annotation | ||
| IL_5K0Y_102 | No text annotation | ||
| IL_5K0Y_060 | No text annotation | ||
| IL_5K0Y_061 | No text annotation | ||
| IL_5K0Y_062 | Single bulged U | ||
| IL_5K0Y_063 | Isolated cWS basepair | ||
| IL_5K0Y_103 | No text annotation | ||
| IL_5K0Y_104 | No text annotation | ||
| IL_5K0Y_064 | Single bulged G | ||
| IL_5K0Y_065 | Minor groove platform | ||
| IL_5K0Y_066 | Single bulged A | ||
| IL_5K0Y_067 | Isolated cWH basepair | ||
| IL_5K0Y_068 | Minor groove platform | ||
| IL_5K0Y_069 | Tandem non-canonical cWW pairs | ||
| IL_5K0Y_105 | No text annotation | ||
| IL_5K0Y_070 | No text annotation | ||
| IL_5K0Y_071 | No text annotation | ||
| IL_5K0Y_106 | No text annotation | ||
| IL_5K0Y_072 | No text annotation | ||
| IL_5K0Y_073 | No text annotation | ||
| IL_5K0Y_118 | No text annotation | ||
| IL_5K0Y_107 | No text annotation | ||
| IL_5K0Y_074 | Multiple bulged bases | ||
| IL_5K0Y_075 | No text annotation | ||
| IL_5K0Y_076 | Isolated non-canonical cWW pair | ||
| IL_5K0Y_108 | No text annotation | ||
| IL_5K0Y_077 | 180 degree turn | ||
| IL_5K0Y_078 | Isolated non-canonical cWW pair | ||
| IL_5K0Y_079 | No text annotation | ||
| IL_5K0Y_080 | No text annotation | ||
| IL_5K0Y_081 | No text annotation | ||
| IL_5K0Y_082 | Isolated non-canonical cWW pair | ||
| IL_5K0Y_083 | No text annotation | ||
| IL_5K0Y_084 | Isolated non-canonical cWW pair | ||
| IL_5K0Y_085 | Double sheared | ||
| IL_5K0Y_086 | Single bulged U | ||
| IL_5K0Y_109 | Tandem non-canonical cWW pairs | ||
| IL_5K0Y_087 | Isolated non-canonical cWW pair | ||
| IL_5K0Y_088 | Double sheared | ||
| IL_5K0Y_089 | Tandem non-canonical cWW pairs | ||
| IL_5K0Y_090 | Triple sheared | ||
| IL_5K0Y_091 | No text annotation | ||
| IL_5K0Y_092 | Single stack bend |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_5K0Y_001 | No text annotation | ||
| J3_5K0Y_014 | No text annotation | ||
| J3_5K0Y_015 | No text annotation | ||
| J3_5K0Y_002 | No text annotation | ||
| J3_5K0Y_016 | No text annotation | ||
| J3_5K0Y_003 | No text annotation | ||
| J3_5K0Y_004 | No text annotation | ||
| J3_5K0Y_005 | No text annotation | ||
| J3_5K0Y_006 | No text annotation | ||
| J3_5K0Y_007 | No text annotation | ||
| J3_5K0Y_008 | No text annotation | ||
| J3_5K0Y_009 | No text annotation | ||
| J3_5K0Y_018 | No text annotation | ||
| J3_5K0Y_010 | No text annotation | ||
| J3_5K0Y_011 | No text annotation | ||
| J3_5K0Y_012 | No text annotation | ||
| J3_5K0Y_017 | No text annotation | ||
| J3_5K0Y_013 | No text annotation | ||
| J4_5K0Y_001 | No text annotation | ||
| J4_5K0Y_002 | No text annotation | ||
| J4_5K0Y_003 | No text annotation | ||
| J4_5K0Y_005 | tRNA junction | ||
| J4_5K0Y_004 | No text annotation | ||
| J5_5K0Y_001 | No text annotation | ||
| J5_5K0Y_002 | No text annotation | ||
| J5_5K0Y_003 | No text annotation | ||
| J5_5K0Y_004 | No text annotation |
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