HL_5K0Y_005

3D structure

PDB id

5K0Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

m48S late-stage initiation complex, purified from rabbit reticulocytes lysates, displaying eIF2 ternary complex and eIF3 i and g subunits relocated to the intersubunit face

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

CAGCGGCG

Length

8 nucleotides

Bulged bases

5K0Y|1|A|A|241

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5K0Y_005 not in the Motif Atlas

Geometric match to HL_5CCB_002

Geometric discrepancy: 0.2442

The information below is about HL_5CCB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_32346.6

Basepair signature

cWW-F

Number of instances in this motif group

11

Unit IDs

5K0Y|1|A|C|240
5K0Y|1|A|A|241
5K0Y|1|A|G|242
5K0Y|1|A|C|243
5K0Y|1|A|G|267
5K0Y|1|A|G|268
5K0Y|1|A|C|269
5K0Y|1|A|G|270

Current chains

Chain A

18S ribosomal RNA

Nearby chains