HL_5K0Y_008

3D structure

PDB id

5K0Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

m48S late-stage initiation complex, purified from rabbit reticulocytes lysates, displaying eIF2 ternary complex and eIF3 i and g subunits relocated to the intersubunit face

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

GUCGCCGUGCC

Length

11 nucleotides

Bulged bases

5K0Y|1|A|G|375

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5K0Y|1|A|G|367
5K0Y|1|A|U|368
5K0Y|1|A|C|369
5K0Y|1|A|G|370
5K0Y|1|A|C|371
5K0Y|1|A|C|372
5K0Y|1|A|G|373
5K0Y|1|A|U|374
5K0Y|1|A|G|375
5K0Y|1|A|C|376
5K0Y|1|A|C|377

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain G

ribosomal protein uS17

Chain o

40S ribosomal protein S8