HL_5K0Y_014
3D structure
- PDB id
- 5K0Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- m48S late-stage initiation complex, purified from rabbit reticulocytes lysates, displaying eIF2 ternary complex and eIF3 i and g subunits relocated to the intersubunit face
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.8 Å
Loop
- Sequence
- ACUUUAAAUCCUU
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5K0Y_014 not in the Motif Atlas
- Geometric match to HL_4V88_199
- Geometric discrepancy: 0.2117
- The information below is about HL_4V88_199
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_05304.1
- Basepair signature
- cWW-cWW-F-F-tSH-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
5K0Y|1|A|A|559
5K0Y|1|A|C|560
5K0Y|1|A|U|561
5K0Y|1|A|U|562
5K0Y|1|A|U|563
5K0Y|1|A|A|564
5K0Y|1|A|A|565
5K0Y|1|A|A|566
5K0Y|1|A|U|567
5K0Y|1|A|C|568
5K0Y|1|A|C|569
5K0Y|1|A|U|570
5K0Y|1|A|U|571
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain I
- 40S ribosomal protein S4
- Chain K
- Ribosomal protein S9 (Predicted)
- Chain s
- 40S ribosomal protein S24
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