HL_5K0Y_018

3D structure

PDB id

5K0Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

m48S late-stage initiation complex, purified from rabbit reticulocytes lysates, displaying eIF2 ternary complex and eIF3 i and g subunits relocated to the intersubunit face

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

UGUUCAAAG

Length

9 nucleotides

Bulged bases

5K0Y|1|A|G|817

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5K0Y_018 not in the Motif Atlas

Homologous match to HL_4V88_203

Geometric discrepancy: 0.204

The information below is about HL_4V88_203

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47383.2

Basepair signature

cWW-F-F-cWW-F-F

Number of instances in this motif group

11

Unit IDs

5K0Y|1|A|U|816
5K0Y|1|A|G|817
5K0Y|1|A|U|818
5K0Y|1|A|U|819
5K0Y|1|A|C|820
5K0Y|1|A|A|821
5K0Y|1|A|A|822
5K0Y|1|A|A|823
5K0Y|1|A|G|824

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain I

40S ribosomal protein S4

Chain K

Ribosomal protein S9 (Predicted)

Chain s

40S ribosomal protein S24