HL_5K0Y_024

3D structure

PDB id

5K0Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

m48S late-stage initiation complex, purified from rabbit reticulocytes lysates, displaying eIF2 ternary complex and eIF3 i and g subunits relocated to the intersubunit face

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

UAUUCCCAUG

Length

10 nucleotides

Bulged bases

5K0Y|1|A|C|1112

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5K0Y|1|A|U|1108
5K0Y|1|A|A|1109
5K0Y|1|A|U|1110
5K0Y|1|A|U|1111
5K0Y|1|A|C|1112
5K0Y|1|A|C|1113
5K0Y|1|A|C|1114
5K0Y|1|A|A|1115
5K0Y|1|A|U|1116
5K0Y|1|A|G|1117

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain Y

40S ribosomal protein S27

Chain e

ribosomal protein eS17

Chain i

ribosomal protein eS1