HL_5K0Y_036

3D structure

PDB id

5K0Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

m48S late-stage initiation complex, purified from rabbit reticulocytes lysates, displaying eIF2 ternary complex and eIF3 i and g subunits relocated to the intersubunit face

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

GUCGGCCCACGGC

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5K0Y_036 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.2145

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.4

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

5K0Y|1|A|G|1754
5K0Y|1|A|U|1755
5K0Y|1|A|C|1756
5K0Y|1|A|G|1757
5K0Y|1|A|G|1758
5K0Y|1|A|C|1759
5K0Y|1|A|C|1760
5K0Y|1|A|C|1761
5K0Y|1|A|A|1762
5K0Y|1|A|C|1763
5K0Y|1|A|G|1764
5K0Y|1|A|G|1765
5K0Y|1|A|C|1766

Current chains

Chain A

18S ribosomal RNA

Nearby chains