HL_5K0Y_041
3D structure
- PDB id
- 5K0Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- m48S late-stage initiation complex, purified from rabbit reticulocytes lysates, displaying eIF2 ternary complex and eIF3 i and g subunits relocated to the intersubunit face
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.8 Å
Loop
- Sequence
- GGUAAUUCU
- Length
- 9 nucleotides
- Bulged bases
- 5K0Y|1|A|U|161
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5K0Y_041 not in the Motif Atlas
- Geometric match to HL_7A0S_056
- Geometric discrepancy: 0.3915
- The information below is about HL_7A0S_056
- Detailed Annotation
- GNRA with extra cWW
- Broad Annotation
- GNRA with extra cWW
- Motif group
- HL_87268.2
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 15
Unit IDs
5K0Y|1|A|G|155
5K0Y|1|A|G|156
5K0Y|1|A|U|157
5K0Y|1|A|A|158
5K0Y|1|A|A|159
5K0Y|1|A|U|160
5K0Y|1|A|U|161
5K0Y|1|A|C|162
5K0Y|1|A|U|163
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain T
- Eukaryotic translation initiation factor 3 subunit I
- Chain q
- 40S ribosomal protein S6
- Chain s
- 40S ribosomal protein S24
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