HL_5K0Y_042

3D structure

PDB id

5K0Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

m48S late-stage initiation complex, purified from rabbit reticulocytes lysates, displaying eIF2 ternary complex and eIF3 i and g subunits relocated to the intersubunit face

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

CCUCGAUGUGUCCCGCG

Length

17 nucleotides

Bulged bases

5K0Y|1|A|U|774, 5K0Y|1|A|G|775, 5K0Y|1|A|C|781

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5K0Y|1|A|C|754
5K0Y|1|A|C|755
5K0Y|1|A|U|756
5K0Y|1|A|C|757
5K0Y|1|A|G|758
5K0Y|1|A|A|759
5K0Y|1|A|U|760
5K0Y|1|A|G|761
5K0Y|1|A|U|774
5K0Y|1|A|G|775
5K0Y|1|A|U|776
5K0Y|1|A|C|777
5K0Y|1|A|C|778
5K0Y|1|A|C|779
5K0Y|1|A|G|780
5K0Y|1|A|C|781
5K0Y|1|A|G|782

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain q

40S ribosomal protein S6