HL_5K0Y_043
3D structure
- PDB id
- 5K0Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- m48S late-stage initiation complex, purified from rabbit reticulocytes lysates, displaying eIF2 ternary complex and eIF3 i and g subunits relocated to the intersubunit face
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.8 Å
Loop
- Sequence
- GCCCAUAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5K0Y_043 not in the Motif Atlas
- Homologous match to HL_4TUE_034
- Geometric discrepancy: 0.2281
- The information below is about HL_4TUE_034
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_06059.7
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 51
Unit IDs
5K0Y|1|N|G|30
5K0Y|1|N|C|31
5K0Y|1|N|C|32
5K0Y|1|N|C|33
5K0Y|1|N|A|34
5K0Y|1|N|U|35
5K0Y|1|N|A|36
5K0Y|1|N|A|37
5K0Y|1|N|C|38
Current chains
- Chain N
- tRNA
Nearby chains
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain F
- mRNA
- Chain H
- ribosomal protein uS9
- Chain P
- Eukaryotic translation initiation factor 2 subunit 1
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