HL_5K7D_002

3D structure

PDB id

5K7D (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of native pistol ribozyme, bound to Iridium

Experimental method

X-RAY DIFFRACTION

Resolution

2.68 Å

Loop

Sequence

GCCCUAAGC

Length

9 nucleotides

Bulged bases (A, C, G, U)

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_86877.1

Basepair signature

cWW-cSH-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

5K7D|1|A|G|33
5K7D|1|A|C|34
5K7D|1|A|C|35
5K7D|1|A|C|36
5K7D|1|A|U|37
5K7D|1|A|A|38
5K7D|1|A|A|39
5K7D|1|A|G|40
5K7D|1|A|C|41

Current chains

Chain A

RNA 47-MER

Nearby chains

Chain B

DNA/RNA 11-MER