HL_5KCR_021

3D structure

PDB id

5KCR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Avilamycin C, mRNA and P-site tRNA at 3.6A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGUAACAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5KCR_021 not in the Motif Atlas

Homologous match to HL_5J7L_154

Geometric discrepancy: 0.0674

The information below is about HL_5J7L_154

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

5KCR|1|1A|G|712
5KCR|1|1A|G|713
5KCR|1|1A|U|714
5KCR|1|1A|A|715
5KCR|1|1A|A|716
5KCR|1|1A|C|717
5KCR|1|1A|A|718
5KCR|1|1A|C|719

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1a

Small subunit ribosomal RNA; SSU rRNA

Chain 1o

30S ribosomal protein S15