5KCR Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
3D | Loop id | Location | Annotation; motif group | Mapped info |
---|---|---|---|---|
HL_5KCR_001 | 1/1A/59:68 | No text annotation | homologous HL_5J7L_134 NA | |
HL_5KCR_002 | 1/1A/87:95 | No text annotation | homologous HL_5J7L_135 NA | |
HL_5KCR_003 | 1/1A/123:128 | No text annotation | homologous HL_5J7L_136 NA | |
HL_5KCR_006 | 1/1A/194:201 | No text annotation | geometric HL_5J7L_139 NA | |
HL_5KCR_007 | 1/1A/225:230 | No text annotation | homologous HL_5J7L_140 NA | |
HL_5KCR_008 | 1/1A/246:252 | No text annotation | homologous HL_5J7L_141 NA | |
HL_5KCR_009 | 1/1A/305:312 | T-loop with 2 stacked bulged bases | homologous HL_5J7L_142 NA | |
HL_5KCR_010 | 1/1A/319:323 | No text annotation | homologous HL_5J7L_143 NA | |
HL_5KCR_011 | 1/1A/327:335 | T-loop with unstacked turn | homologous HL_5J7L_144 NA | |
HL_5KCR_012 | 1/1A/382:392 | No text annotation | homologous HL_5J7L_145 NA | |
HL_5KCR_013 | 1/1A/410:417 | Pseudoknot geometry | homologous HL_5J7L_146 NA | |
HL_5KCR_014 | 1/1A/462:467 | GNRA | homologous HL_7RQB_015 NA | |
HL_5KCR_015 | 1/1A/487:493 | GNRA | homologous HL_5J7L_148 NA | |
HL_5KCR_017 | 1/1A/566:575 | T-loop with 2 stacked bulged bases | homologous HL_5J7L_150 NA | |
HL_5KCR_018 | 1/1A/611:617 | No text annotation | homologous HL_5J7L_151 NA | |
HL_5KCR_019 | 1/1A/629:634 | GNRA | homologous HL_5J7L_152 NA | |
HL_5KCR_020 | 1/1A/641:647 | No text annotation | homologous HL_5J7L_153 NA | |
HL_5KCR_022 | 1/1A/744:753 | No text annotation | homologous HL_5J7L_155 NA | |
HL_5KCR_023 | 1/1A/779:785 | No text annotation | homologous HL_5J7L_156 NA | |
HL_5KCR_024 | 1/1A/826:831 | No text annotation | homologous HL_7RQB_025 NA | |
HL_5KCR_107 | 1/1A/955:962 | GNRA | homologous HL_5J7L_211 NA | |
HL_5KCR_027 | 1/1A/978:985 | No text annotation | homologous HL_5J7L_160 NA | |
HL_5KCR_031 | 1/1A/1222:1227 | GNRA | homologous HL_5J7L_164 NA | |
HL_5KCR_032 | 1/1A/1281:1289 | T-loop with 2 stacked bulged bases | homologous HL_5J7L_165 NA | |
HL_5KCR_033 | 1/1A/1324:1330 | Pseudoknot geometry with 3' bulge | homologous HL_5J7L_166 NA | |
HL_5KCR_034 | 1/1A/1363:1368 | GNRA | homologous HL_5J7L_167 NA | |
HL_5KCR_035 | 1/1A/1389:1398 | No text annotation | homologous HL_5J7L_168 NA | |
HL_5KCR_036 | 1/1A/1451:1459 | Mini UNCG with extended bulge | geometric HL_5J7L_169 NA | |
HL_5KCR_037 | 1/1A/1492:1498 | Pseudoknot geometry with 3' bulge | homologous HL_5J7L_170 NA | |
HL_5KCR_039 | 1/1A/1565:1568 | No text annotation | homologous HL_7RQB_039 NA | |
HL_5KCR_040 | 1/1A/1612:1619 | No text annotation | homologous HL_5J7L_173 NA | |
HL_5KCR_041 | 1/1A/1630:1636 | GNRA | homologous HL_5J7L_174 NA | |
HL_5KCR_042 | 1/1A/1691:1696 | UNCG | geometric HL_5J7L_175 NA | |
HL_5KCR_108 | 1/1A/1727:1733 | No text annotation | homologous HL_5J7L_214 NA | |
HL_5KCR_044 | 1/1A/1752:1756 | No text annotation | homologous HL_5J7L_177 NA | |
HL_5KCR_045 | 1/1A/1777:1787 | No text annotation | homologous HL_5J7L_178 NA | |
HL_5KCR_046 | 1/1A/1806:1811 | GNRA related | homologous HL_5J7L_179 NA | |
HL_5KCR_048 | 1/1A/1910:1920 | No text annotation | homologous HL_5J7L_181 NA | |
HL_5KCR_049 | 1/1A/1949:1957 | No text annotation | homologous HL_7RQB_049 NA | |
HL_5KCR_050 | 1/1A/2027:2036 | No text annotation | homologous HL_5J7L_183 NA | |
HL_5KCR_052 | 1/1A/2209:2215 | No text annotation | homologous HL_5J7L_185 NA | |
HL_5KCR_053 | 1/1A/2248:2256 | No text annotation | homologous HL_5J7L_186 NA | |
HL_5KCR_054 | 1/1A/2264:2276 | No text annotation | homologous HL_5J7L_187 NA | |
HL_5KCR_056 | 1/1A/2324:2331 | Pseudoknot geometry | homologous HL_5J7L_189 NA | |
HL_5KCR_057 | 1/1A/2356:2361 | GNRA | homologous HL_5J7L_190 NA | |
HL_5KCR_058 | 1/1A/2374:2379 | GNRA | homologous HL_5J7L_191 NA | |
HL_5KCR_059 | 1/1A/2404:2413 | No text annotation | homologous HL_5J7L_192 NA | |
HL_5KCR_060 | 1/1A/2471:2479 | No text annotation | homologous HL_5J7L_193 NA | |
HL_5KCR_061 | 1/1A/2528:2535 | GNRA variation | homologous HL_5J7L_194 NA | |
HL_5KCR_062 | 1/1A/2551:2557 | No text annotation | homologous HL_5J7L_195 NA | |
HL_5KCR_063 | 1/1A/2594:2599 | GNRA | homologous HL_5J7L_196 NA | |
HL_5KCR_064 | 1/1A/2658:2663 | GNRA | homologous HL_5J7L_197 NA | |
HL_5KCR_065 | 1/1A/2701:2706 | Ribsomal LSU H95 | homologous HL_5J7L_198 NA | |
HL_5KCR_066 | 1/1A/2745:2759 | No text annotation | homologous HL_5J7L_199 NA | |
HL_5KCR_068 | 1/1A/2819:2827 | No text annotation | homologous HL_5J7L_201 NA | |
HL_5KCR_069 | 1/1A/2856:2861 | GNRA | homologous HL_5J7L_202 NA | |
HL_5KCR_109 | 1/1B/34:48 | No text annotation | homologous HL_5J7L_215 NA | |
HL_5KCR_071 | 1/1B/86:90 | Mini UNCG | homologous HL_5J7L_204 NA | |
HL_5KCR_072 | 1/1a/12:22 | No text annotation | homologous HL_4LFB_001 HL_73535.1 | |
HL_5KCR_074 | 1/1a/158:163 | GNRA | homologous HL_5J7L_003 NA | |
HL_5KCR_075 | 1/1a/186:191 | GNRA | homologous HL_5J7L_004 NA | |
HL_5KCR_077 | 1/1a/259:267 | GNRA related | homologous HL_5J7L_006 NA | |
HL_5KCR_078 | 1/1a/296:301 | GNRA | homologous HL_5J7L_007 NA | |
HL_5KCR_079 | 1/1a/320:333 | No text annotation | homologous HL_4LFB_008 HL_39665.1 | |
HL_5KCR_080 | 1/1a/342:347 | UNCG | homologous HL_4LFB_009 HL_61337.2 | |
HL_5KCR_081 | 1/1a/379:384 | GNRA | homologous HL_5J7L_010 NA | |
HL_5KCR_082 | 1/1a/419:424 | UNCG | homologous HL_4LFB_011 HL_61337.2 | |
HL_5KCR_084 | 1/1a/522:527 | No text annotation | geometric HL_4WF9_003 HL_75660.7 | |
HL_5KCR_085 | 1/1a/617:623 | GNRA-like with tWH | homologous HL_4LFB_014 HL_86621.1 | |
HL_5KCR_086 | 1/1a/689:698 | No text annotation | homologous HL_5J7L_015 NA | |
HL_5KCR_087 | 1/1a/726:731 | GNRA | homologous HL_5J7L_016 NA | |
HL_5KCR_088 | 1/1a/786:796 | No text annotation | homologous HL_5J7L_017 NA | |
HL_5KCR_090 | 1/1a/862:867 | GNRA | homologous HL_5J7L_019 NA | |
HL_5KCR_091 | 1/1a/897:902 | GNRA | homologous HL_4LFB_020 HL_34789.2 | |
HL_5KCR_092 | 1/1a/963:972 | No text annotation | homologous HL_5J7L_021 NA | |
HL_5KCR_094 | 1/1a/1076:1081 | GNRA | homologous HL_5J7L_023 NA | |
HL_5KCR_095 | 1/1a/1089:1096 | T-loop related | homologous HL_5J7L_024 NA | |
HL_5KCR_098 | 1/1a/1265:1270 | GNRA | homologous HL_5J7L_027 NA | |
HL_5KCR_099 | 1/1a/1314:1323 | T-loop with 3 stacked bulged bases | homologous HL_5J7L_028 NA | |
HL_5KCR_100 | 1/1a/1356:1366 | No text annotation | homologous HL_4LFB_030 HL_86432.1 | |
HL_5KCR_101 | 1/1a/1449:1454 | UNCG | homologous HL_5J7L_030 NA | |
HL_5KCR_102 | 1/1a/1515:1520 | GNRA | homologous HL_5J7L_031 NA | |
HL_5KCR_104 | 1/1x/32:40 | tRNA anticodon loop | homologous HL_3TUP_002 HL_81376.2 |
Problematic loops
# | loop id | Problem | Sequence |
---|---|---|---|
HL_5KCR_004 | No text annotation | ||
HL_5KCR_113 | No text annotation | ||
HL_5KCR_005 | No text annotation | ||
HL_5KCR_016 | No text annotation | ||
HL_5KCR_021 | GNRA wlth tandem sheared | ||
HL_5KCR_025 | No text annotation | ||
HL_5KCR_026 | No text annotation | ||
HL_5KCR_028 | No text annotation | ||
HL_5KCR_029 | GNRA wlth tandem sheared | ||
HL_5KCR_030 | No text annotation | ||
HL_5KCR_114 | No text annotation | ||
HL_5KCR_038 | UNCG | ||
HL_5KCR_043 | No text annotation | ||
HL_5KCR_047 | GNRA variation | ||
HL_5KCR_051 | No text annotation | ||
HL_5KCR_055 | No text annotation | ||
HL_5KCR_115 | No text annotation | ||
HL_5KCR_067 | UNCG variation | ||
HL_5KCR_070 | No text annotation | ||
HL_5KCR_073 | No text annotation | ||
HL_5KCR_116 | No text annotation | ||
HL_5KCR_076 | UNCG | ||
HL_5KCR_083 | GNRA wlth extra near cWW | ||
HL_5KCR_089 | No text annotation | ||
HL_5KCR_093 | GNRA | ||
HL_5KCR_110 | No text annotation | ||
HL_5KCR_096 | No text annotation | ||
HL_5KCR_097 | GNRA | ||
HL_5KCR_103 | No text annotation | ||
HL_5KCR_111 | No text annotation | ||
HL_5KCR_112 | No text annotation | ||
HL_5KCR_105 | GNRA with extra near cWW | ||
HL_5KCR_106 | T-loop with 2 stacked bulged bases |
Valid loops
3D | Loop id | Location | Annotation; motif group | Mapped info |
---|---|---|---|---|
IL_5KCR_001 | 1/1A/24:30, 1/1A/510:516 | Triple sheared with non-canonical cWW | homologous IL_5J7L_245 NA | |
IL_5KCR_002 | 1/1A/36:37, 1/1A/442:444 | Single bulged A | homologous IL_5J7L_246 NA | |
IL_5KCR_004 | 1/1A/81:85, 1/1A/97:105 | No text annotation | homologous IL_5J7L_248 NA | |
IL_5KCR_005 | 1/1A/183:184, 1/1A/212:214 | Single stack bend | homologous IL_5J7L_249 NA | |
IL_5KCR_006 | 1/1A/188:194, 1/1A/201:208 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5J7L_250 NA | |
IL_5KCR_007 | 1/1A/239:245, 1/1A/253:258 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_5J7L_251 NA | |
IL_5KCR_008 | 1/1A/269:271, 1/1A/366:370 | No text annotation | homologous IL_5J7L_252 NA | |
IL_5KCR_010 | 1/1A/293:295, 1/1A/343:347 | No text annotation | homologous IL_5J7L_254 NA | |
IL_5KCR_011 | 1/1A/481:484, 1/1A/496:509 | No text annotation | geometric IL_5J7L_255 NA | |
IL_5KCR_012 | 1/1A/536:539, 1/1A/554:557 | Double sheared | homologous IL_5J7L_256 NA | |
IL_5KCR_013 | 1/1A/564:566, 1/1A/575:577 | Isolated non-canonical cWW pair | geometric IL_5J7L_257 NA | |
IL_5KCR_014 | 1/1A/606:610, 1/1A/618:622 | AAA cross-strand stack | homologous IL_5J7L_258 NA | |
IL_5KCR_015 | 1/1A/672:674, 1/1A/806:808 | Isolated non-canonical cWW pair | geometric IL_5J7L_259 NA | |
IL_5KCR_016 | 1/1A/674:678, 1/1A/799:806 | tHW-tHW cross-strand stack | homologous IL_5J7L_260 NA | |
IL_5KCR_017 | 1/1A/697:698, 1/1A/763:765 | Single bulged A | geometric IL_5J7L_261 NA | |
IL_5KCR_018 | 1/1A/702:703, 1/1A/728:730 | Single bulged G | geometric IL_5J7L_262 NA | |
IL_5KCR_019 | 1/1A/703:707, 1/1A/724:728 | Triple sheared | homologous IL_5J7L_263 NA | |
IL_5KCR_020 | 1/1A/738:740, 1/1A/757:758 | Major groove platform | homologous IL_5J7L_264 NA | |
IL_5KCR_021 | 1/1A/775:777, 1/1A/787:791 | Multiple bulged bases | geometric IL_5J7L_265 NA | |
IL_5KCR_022 | 1/1A/837:838, 1/1A/940:942 | Single stack bend | homologous IL_5J7L_266 NA | |
IL_5KCR_023 | 1/1A/844:847, 1/1A/933:934 | 90 degree turn | geometric IL_5J7L_267 NA | |
IL_5KCR_181 | 1/1A/844:848, 1/1A/930:934 | No text annotation | geometric IL_5J7L_399 NA | |
IL_5KCR_024 | 1/1A/847:848, 1/1A/930:933 | Stack outside cWW | geometric IL_5J7L_268 NA | |
IL_5KCR_025 | 1/1A/850:851, 1/1A/926:928 | Single stack bend | homologous IL_5J7L_269 NA | |
IL_5KCR_026 | 1/1A/856:862, 1/1A/915:921 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | homologous IL_5J7L_270 NA | |
IL_5KCR_027 | 1/1A/862:863, 1/1A/913:915 | Single bulged G | geometric IL_5J7L_271 NA | |
IL_5KCR_028 | 1/1A/864:868, 1/1A/909:912 | C-loop with bulged stacked A's | homologous IL_5J7L_272 NA | |
IL_5KCR_029 | 1/1A/870:872, 1/1A/905:907 | Isolated non-canonical cWW pair | homologous IL_5J7L_273 NA | |
IL_5KCR_032 | 1/1A/994:996, 1/1A/1159:1160 | Single bulged C | homologous IL_5J7L_276 NA | |
IL_5KCR_033 | 1/1A/998:1002, 1/1A/1153:1157 | UAA/GAN | homologous IL_5J7L_277 NA | |
IL_5KCR_034 | 1/1A/1004:1011, 1/1A/1150:1151 | SSU/LSU pseudoknot | geometric IL_5J7L_278 NA | |
IL_5KCR_035 | 1/1A/1011:1013, 1/1A/1149:1150 | Single bulged U | homologous IL_5J7L_279 NA | |
IL_5KCR_036 | 1/1A/1018:1024, 1/1A/1140:1144 | Kink-turn related | geometric IL_5J7L_280 NA | |
IL_5KCR_037 | 1/1A/1024:1030, 1/1A/1124:1140 | No text annotation | geometric IL_5J7L_281 NA | |
IL_5KCR_038 | 1/1A/1031:1034, 1/1A/1121:1123 | Isolated non-canonical cWW pair | homologous IL_5J7L_282 NA | |
IL_5KCR_039 | 1/1A/1038:1041, 1/1A/1114:1117 | Tandem non-canonical cWW pairs | homologous IL_5J7L_283 NA | |
IL_5KCR_043 | 1/1A/1196:1198, 1/1A/1247:1250 | Isolated cWS basepair | homologous IL_5J7L_286 NA | |
IL_5KCR_044 | 1/1A/1202:1206, 1/1A/1240:1243 | No text annotation | homologous IL_5J7L_287 NA | |
IL_5KCR_045 | 1/1A/1208:1215, 1/1A/1234:1238 | Kink-turn | homologous IL_5J7L_288 NA | |
IL_5KCR_046 | 1/1A/1262:1269, 1/1A/2011:2017 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5J7L_289 NA | |
IL_5KCR_047 | 1/1A/1310:1313, 1/1A/1603:1604 | Major groove platform; stack outside cWW | homologous IL_5J7L_290 NA | |
IL_5KCR_048 | 1/1A/1319:1323, 1/1A/1331:1333 | C-loop | homologous IL_5J7L_291 NA | |
IL_5KCR_049 | 1/1A/1351:1355, 1/1A/1376:1380 | UAA/GAN | homologous IL_5J7L_292 NA | |
IL_5KCR_050 | 1/1A/1357:1361, 1/1A/1370:1374 | tSH-tHW-tHS | homologous IL_5J7L_293 NA | |
IL_5KCR_053 | 1/1A/1432:1435, 1/1A/1557:1561 | Tandem non-canonical cWW pairs | homologous IL_5J7L_296 NA | |
IL_5KCR_054 | 1/1A/1437:1440, 1/1A/1551:1555 | tSH-tHW | homologous IL_5J7L_297 NA | |
IL_5KCR_055 | 1/1A/1450:1451, 1/1A/1459:1461 | Single bulged U | homologous IL_5J7L_298 NA | |
IL_5KCR_056 | 1/1A/1468:1471, 1/1A/1520:1524 | No text annotation | homologous IL_5J7L_299 NA | |
IL_5KCR_057 | 1/1A/1474:1478, 1/1A/1513:1517 | tSH-tHW-tHS | homologous IL_5J7L_300 NA | |
IL_5KCR_058 | 1/1A/1481:1482, 1/1A/1507:1510 | 180 degree turn | homologous IL_5J7L_301 NA | |
IL_5KCR_059 | 1/1A/1489:1491, 1/1A/1499:1500 | Single bulged A | homologous IL_5J7L_302 NA | |
IL_5KCR_060 | 1/1A/1526:1529, 1/1A/1542:1546 | UAA/GAN variation | homologous IL_5J7L_303 NA | |
IL_5KCR_061 | 1/1A/1651:1656, 1/1A/2004:2006 | No text annotation | homologous IL_5J7L_304 NA | |
IL_5KCR_062 | 1/1A/1663:1665, 1/1A/1995:1997 | Isolated tWW turn | homologous IL_5J7L_305 NA | |
IL_5KCR_063 | 1/1A/1666:1669, 1/1A/1993:1994 | Major groove platform; stack outside cWW | geometric IL_5J7L_306 NA | |
IL_5KCR_185 | 1/1A/1666:1674, 1/1A/1990:1994 | No text annotation | homologous IL_5J7L_386 NA | |
IL_5KCR_064 | 1/1A/1669:1674, 1/1A/1990:1993 | Intercalated tWH | homologous IL_5J7L_307 NA | |
IL_5KCR_065 | 1/1A/1686:1691, 1/1A/1696:1702 | tSH-tSH-tHH-tHS | homologous IL_5J7L_308 NA | |
IL_5KCR_066 | 1/1A/1712:1718, 1/1A/1742:1746 | 6x5 Sarcin-Ricin; G-bulge | homologous IL_5J7L_309 NA | |
IL_5KCR_067 | 1/1A/1720:1724, 1/1A/1736:1740 | Triple sheared | homologous IL_5J7L_310 NA | |
IL_5KCR_068 | 1/1A/1727:1728, 1/1A/1731:1733 | Single bulged C | homologous IL_5J7L_311 NA | |
IL_5KCR_069 | 1/1A/1770:1771, 1/1A/1980:1982 | Single bulged A | homologous IL_5J7L_312 NA | |
IL_5KCR_070 | 1/1A/1798:1804, 1/1A/1813:1821 | Kink-turn related | homologous IL_5J7L_313 NA | |
IL_5KCR_071 | 1/1A/1837:1840, 1/1A/1902:1903 | Minor groove platform, major groove intercalation | homologous IL_5J7L_314 NA | |
IL_5KCR_072 | 1/1A/1841:1842, 1/1A/1898:1901 | Major groove intercalation | homologous IL_5J7L_315 NA | |
IL_5KCR_073 | 1/1A/1846:1849, 1/1A/1893:1894 | Major groove minor groove platform; mini C-loop | homologous IL_5J7L_316 NA | |
IL_5KCR_186 | 1/1A/1851:1860, 1/1A/1882:1891 | No text annotation | homologous IL_5J7L_387 NA | |
IL_5KCR_074 | 1/1A/1864:1867, 1/1A/1874:1878 | UAA/GAN related | homologous IL_5J7L_317 NA | |
IL_5KCR_075 | 1/1A/1933:1934, 1/1A/1964:1967 | Bulged stacked bases | homologous IL_7RQB_076 NA | |
IL_5KCR_076 | 1/1A/1934:1945, 1/1A/1961:1964 | No text annotation | geometric IL_7A0S_072 IL_04332.3 | |
IL_5KCR_077 | 1/1A/2050:2052, 1/1A/2617:2618 | Major groove platform | homologous IL_5J7L_320 NA | |
IL_5KCR_078 | 1/1A/2054:2056, 1/1A/2612:2615 | No text annotation | homologous IL_5J7L_321 NA | |
IL_5KCR_187 | 1/1A/2067:2069, 1/1A/2442:2443 | Single bulged U | homologous IL_5J7L_388 NA | |
IL_5KCR_081 | 1/1A/2070:2071, 1/1A/2438:2441 | Minor groove platform | geometric IL_7RQB_081 NA | |
IL_5KCR_082 | 1/1A/2081:2083, 1/1A/2236:2239 | Isolated tHS basepair with bulges | homologous IL_5J7L_325 NA | |
IL_5KCR_083 | 1/1A/2085:2087, 1/1A/2232:2234 | Isolated non-canonical cWW pair | homologous IL_5J7L_326 NA | |
IL_5KCR_088 | 1/1A/2202:2204, 1/1A/2220:2221 | Single bulged U | homologous IL_5J7L_331 NA | |
IL_5KCR_090 | 1/1A/2350:2353, 1/1A/2364:2367 | Double sheared | homologous IL_5J7L_333 NA | |
IL_5KCR_189 | 1/1A/2453:2454, 1/1A/2498:2500 | Single stack bend | homologous IL_5J7L_391 NA | |
IL_5KCR_190 | 1/1A/2454:2455, 1/1A/2496:2498 | Major groove platform | homologous IL_5J7L_392 NA | |
IL_5KCR_191 | 1/1A/2457:2459, 1/1A/2493:2494 | Major groove platform | homologous IL_5J7L_393 NA | |
IL_5KCR_094 | 1/1A/2459:2461, 1/1A/2489:2493 | Major groove minor groove platform with extra cWW | homologous IL_5J7L_337 NA | |
IL_5KCR_095 | 1/1A/2466:2470, 1/1A/2480:2484 | Double sheared with non-canonical cWW | homologous IL_5J7L_338 NA | |
IL_5KCR_192 | 1/1A/2507:2508, 1/1A/2580:2582 | Major groove platform | homologous IL_5J7L_394 NA | |
IL_5KCR_097 | 1/1A/2510:2512, 1/1A/2574:2578 | Isolated non-canonical cWW with bulges | geometric IL_5J7L_340 NA | |
IL_5KCR_098 | 1/1A/2512:2513, 1/1A/2571:2574 | No text annotation | homologous IL_5J7L_341 NA | |
IL_5KCR_099 | 1/1A/2522:2523, 1/1A/2540:2543 | Major groove platform with intercalation | homologous IL_5J7L_342 NA | |
IL_5KCR_101 | 1/1A/2591:2592, 1/1A/2601:2603 | Single bulged A | homologous IL_5J7L_344 NA | |
IL_5KCR_102 | 1/1A/2636:2640, 1/1A/2774:2782 | tSH-tHS-tHW | homologous IL_5J7L_345 NA | |
IL_5KCR_103 | 1/1A/2652:2658, 1/1A/2663:2668 | Sarcin-Ricin target in LSU H95; G-bulge | geometric IL_5J7L_346 NA | |
IL_5KCR_104 | 1/1A/2680:2684, 1/1A/2725:2727 | C-loop | homologous IL_5J7L_347 NA | |
IL_5KCR_105 | 1/1A/2687:2691, 1/1A/2718:2722 | UAA/GAN related, with intercalation | homologous IL_5J7L_348 NA | |
IL_5KCR_106 | 1/1A/2695:2696, 1/1A/2711:2714 | Multiple bulged bases | homologous IL_5J7L_349 NA | |
IL_5KCR_107 | 1/1A/2737:2742, 1/1A/2762:2767 | UAA/GAN with extra cWW | homologous IL_5J7L_350 NA | |
IL_5KCR_109 | 1/1A/2838:2839, 1/1A/2878:2880 | Major groove intercalation | homologous IL_5J7L_352 NA | |
IL_5KCR_110 | 1/1A/2843:2846, 1/1A/2870:2874 | Multiple bulged bases with non-canonical cWW | homologous IL_5J7L_353 NA | |
IL_5KCR_111 | 1/1A/2847:2852, 1/1A/2865:2869 | tHS double platform | homologous IL_5J7L_354 NA | |
IL_5KCR_112 | 1/1B/17:18, 1/1B/65:67 | Major groove intercalation | homologous IL_5J7L_355 NA | |
IL_5KCR_115 | 1/1B/34:38, 1/1B/44:48 | Symmetric double minor groove platform | homologous IL_5J7L_358 NA | |
IL_5KCR_116 | 1/1B/71:79, 1/1B/97:105 | Bacterial 5S Loop E | homologous IL_5J7L_359 NA | |
IL_5KCR_117 | 1/1a/30:32, 1/1a/552:553 | Single bulged G | homologous IL_6CZR_113 NA | |
IL_5KCR_118 | 1/1a/44:45, 1/1a/396:398 | Single bulged A | homologous IL_5J7L_002 NA | |
IL_5KCR_119 | 1/1a/47:52, 1/1a/359:361 | No text annotation | geometric IL_5J7L_003 NA | |
IL_5KCR_120 | 1/1a/54:56, 1/1a/356:357 | Minor groove platform | homologous IL_4LFB_004 IL_34520.2 | |
IL_5KCR_121 | 1/1a/63:66, 1/1a/103:104 | Multiple bulged bases | homologous IL_4LFB_005 IL_71421.2 | |
IL_5KCR_125 | 1/1a/128:131, 1/1a/231:233 | Isolated non-canonical cWW pair | homologous IL_5J7L_009 NA | |
IL_5KCR_126 | 1/1a/132:136, 1/1a/227:230 | Minor groove platform related | homologous IL_5J7L_010 NA | |
IL_5KCR_128 | 1/1a/147:153, 1/1a/168:175 | tWH-tWH-tHW-tHW | homologous IL_5J7L_012 NA | |
IL_5KCR_130 | 1/1a/242:247, 1/1a/277:284 | Kink-turn with non-sequential stacking | homologous IL_5J7L_014 NA | |
IL_5KCR_131 | 1/1a/249:252, 1/1a/274:275 | No text annotation | homologous IL_5J7L_015 NA | |
IL_5KCR_132 | 1/1a/292:293, 1/1a/304:308 | C-loop | homologous IL_5J7L_016 NA | |
IL_5KCR_133 | 1/1a/367:369, 1/1a/392:393 | Single bulged U | geometric IL_5J7L_017 NA | |
IL_5KCR_134 | 1/1a/371:375, 1/1a/389:390 | C-loop | homologous IL_5J7L_018 NA | |
IL_5KCR_135 | 1/1a/375:376, 1/1a/387:389 | Single bulged G | geometric IL_5J7L_019 NA | |
IL_5KCR_137 | 1/1a/440:442, 1/1a/492:497 | No text annotation | homologous IL_5J7L_021 NA | |
IL_5KCR_138 | 1/1a/446:450, 1/1a/483:488 | tSH-tHW-tWW | homologous IL_5J7L_022 NA | |
IL_5KCR_139 | 1/1a/450:455, 1/1a/477:483 | No text annotation | homologous IL_4LFB_019 IL_31561.1 | |
IL_5KCR_140 | 1/1a/504:511, 1/1a/540:541 | SSU/LSU pseudoknot | homologous IL_4LFB_020 IL_11411.1 | |
IL_5KCR_141 | 1/1a/515:521, 1/1a/528:536 | Kink-turn related | geometric IL_4V88_415 NA | |
IL_5KCR_142 | 1/1a/580:584, 1/1a/757:761 | tSH-tHW-tHS | homologous IL_5J7L_027 NA | |
IL_5KCR_144 | 1/1a/597:598, 1/1a/640:643 | Major groove minor groove platform; mini C-loop | homologous IL_4LFB_025 IL_73108.2 | |
IL_5KCR_145 | 1/1a/605:612, 1/1a/628:633 | No text annotation | homologous IL_5J7L_030 NA | |
IL_5KCR_146 | 1/1a/654:655, 1/1a/751:754 | Major groove platform; stack outside cWW | geometric IL_4LFB_027 IL_74641.2 | |
IL_5KCR_147 | 1/1a/658:659, 1/1a/746:748 | Single stack bend | homologous IL_5J7L_032 NA | |
IL_5KCR_148 | 1/1a/662:666, 1/1a/740:743 | Tandem non-canonical cWW pairs | homologous IL_5J7L_033 NA | |
IL_5KCR_194 | 1/1a/673:677, 1/1a/713:717 | Triple non-canonical cWW pairs | geometric IL_4LFB_065 IL_71154.2 | |
IL_5KCR_149 | 1/1a/684:688, 1/1a/699:706 | Kink-turn | homologous IL_5J7L_035 NA | |
IL_5KCR_150 | 1/1a/774:778, 1/1a/804:805 | Left turn | homologous IL_4LFB_032 IL_29346.3 | |
IL_5KCR_151 | 1/1a/779:783, 1/1a/799:803 | tSH-tHW-tHS | homologous IL_4LFB_033 IL_05821.1 | |
IL_5KCR_152 | 1/1a/887:894, 1/1a/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_5J7L_038 NA | |
IL_5KCR_153 | 1/1a/922:923, 1/1a/1393:1395 | Single bulged A | homologous IL_5J7L_039 NA | |
IL_5KCR_154 | 1/1a/925:927, 1/1a/1390:1391 | Single bulged G | homologous IL_4LFB_036 IL_28408.2 | |
IL_5KCR_155 | 1/1a/933:935, 1/1a/1380:1384 | Minor groove platform | homologous IL_4LFB_037 IL_61370.1 | |
IL_5KCR_156 | 1/1a/953:954, 1/1a/1226:1228 | Minor groove platform | homologous IL_5J7L_042 NA | |
IL_5KCR_160 | 1/1a/1048:1050, 1/1a/1208:1209 | Single bulged U | homologous IL_5J7L_046 NA | |
IL_5KCR_161 | 1/1a/1052:1056, 1/1a/1204:1206 | Isolated cWS basepair | homologous IL_4LFB_044 IL_82453.1 | |
IL_5KCR_162 | 1/1a/1057:1058, 1/1a/1199:1203 | Minor groove platform | homologous IL_4LFB_045 IL_24264.1 | |
IL_5KCR_163 | 1/1a/1060:1061, 1/1a/1195:1197 | Single bulged A | homologous IL_5J7L_049 NA | |
IL_5KCR_164 | 1/1a/1061:1063, 1/1a/1193:1195 | Isolated non-canonical cWW pair | geometric IL_4LFB_047 IL_68118.2 | |
IL_5KCR_165 | 1/1a/1124:1128, 1/1a/1144:1149 | No text annotation | homologous IL_5J7L_051 NA | |
IL_5KCR_167 | 1/1a/1158:1161, 1/1a/1175:1181 | No text annotation | geometric IL_4LFB_050 IL_32376.1 | |
IL_5KCR_168 | 1/1a/1247:1253, 1/1a/1284:1290 | No text annotation | homologous IL_5J7L_054 NA | |
IL_5KCR_169 | 1/1a/1255:1258, 1/1a/1277:1282 | 180 degree turn | homologous IL_5J7L_055 NA | |
IL_5KCR_170 | 1/1a/1259:1263, 1/1a/1272:1276 | Double sheared with non-canonical cWW | homologous IL_5J7L_056 NA | |
IL_5KCR_171 | 1/1a/1303:1308, 1/1a/1329:1334 | No text annotation | homologous IL_5J7L_057 NA | |
IL_5KCR_172 | 1/1a/1399:1401, 1/1a/1501:1504 | No text annotation | homologous IL_5J7L_058 NA | |
IL_5KCR_173 | 1/1a/1401:1404, 1/1a/1497:1501 | No text annotation | homologous IL_5J7L_059 NA | |
IL_5KCR_174 | 1/1a/1405:1407, 1/1a/1494:1496 | Isolated non-canonical cWW pair | geometric IL_3BNR_012 IL_71625.2 | |
IL_5KCR_175 | 1/1a/1407:1409, 1/1a/1491:1494 | Isolated non-canonical cWW pair | geometric IL_5J7L_009 NA | |
IL_5KCR_176 | 1/1a/1412:1414, 1/1a/1486:1488 | Isolated non-canonical cWW pair | homologous IL_5J7L_061 NA | |
IL_5KCR_177 | 1/1a/1416:1419, 1/1a/1481:1484 | Double sheared | homologous IL_6CZR_169 NA | |
IL_5KCR_178 | 1/1a/1430:1435, 1/1a/1466:1470 | Triple sheared related | homologous IL_5J7L_063 NA | |
IL_5KCR_179 | 1/1a/1440:1442, 1/1a/1460:1461 | Single bulged A | homologous IL_5J7L_064 NA | |
IL_5KCR_180 | 1/1a/1445:1448, 1/1a/1455:1457 | No text annotation | homologous IL_5J7L_065 NA |
Problematic loops
# | loop id | Problem | Sequence |
---|---|---|---|
IL_5KCR_003 | Minor groove platform | ||
IL_5KCR_009 | No text annotation | ||
IL_5KCR_030 | Double sheared with non-canonical cWW | ||
IL_5KCR_182 | No text annotation | ||
IL_5KCR_031 | Other IL | ||
IL_5KCR_040 | Kink-turn | ||
IL_5KCR_041 | No text annotation | ||
IL_5KCR_183 | Major groove platform | ||
IL_5KCR_042 | Major groove platform with extra cWW | ||
IL_5KCR_184 | No text annotation | ||
IL_5KCR_051 | No text annotation | ||
IL_5KCR_052 | UAA/GAN | ||
IL_5KCR_079 | No text annotation | ||
IL_5KCR_080 | No text annotation | ||
IL_5KCR_084 | No text annotation | ||
IL_5KCR_188 | No text annotation | ||
IL_5KCR_193 | No text annotation | ||
IL_5KCR_085 | No text annotation | ||
IL_5KCR_086 | Kink-turn related | ||
IL_5KCR_087 | Kink-turn | ||
IL_5KCR_089 | No text annotation | ||
IL_5KCR_091 | Single bulged U | ||
IL_5KCR_092 | No text annotation | ||
IL_5KCR_093 | Major groove platform with extra pair | ||
IL_5KCR_096 | No text annotation | ||
IL_5KCR_100 | No text annotation | ||
IL_5KCR_108 | No text annotation | ||
IL_5KCR_113 | No text annotation | ||
IL_5KCR_114 | Major groove minor groove platform; mini C-loop | ||
IL_5KCR_122 | Minor groove platform with extra cWW | ||
IL_5KCR_123 | Minor groove platform | ||
IL_5KCR_124 | Major groove intercalation | ||
IL_5KCR_127 | Isolated cWH basepair | ||
IL_5KCR_129 | No text annotation | ||
IL_5KCR_136 | No text annotation | ||
IL_5KCR_143 | Major groove platform | ||
IL_5KCR_157 | Minor groove platform | ||
IL_5KCR_158 | Single stack bend | ||
IL_5KCR_159 | No text annotation | ||
IL_5KCR_166 | Minor groove platform |
Valid loops
3D | Loop id | Location | Annotation; motif group | Mapped info |
---|---|---|---|---|
J3_5KCR_001 | 1/1A/30:31, 1/1A/474:481, 1/1A/509:510 | No text annotation | homologous J3_5J7L_036 NA | |
J3_5KCR_025 | 1/1A/30:31, 1/1A/474:484, 1/1A/496:510 | No text annotation | homologous J3_5J7L_066 NA | |
J3_5KCR_026 | 1/1A/32:35, 1/1A/445:461, 1/1A/468:473 | No text annotation | homologous J3_5J7L_067 NA | |
J3_5KCR_002 | 1/1A/56:57, 1/1A/70:76, 1/1A/110:114 | No text annotation | homologous J3_5J7L_037 NA | |
J3_5KCR_027 | 1/1A/297:301, 1/1A/316:325, 1/1A/337:341 | No text annotation | homologous J3_5J7L_068 NA | |
J3_5KCR_003 | 1/1A/683:689, 1/1A/773:775, 1/1A/791:794 | No text annotation | homologous J3_7RQB_004 NA | |
J3_5KCR_004 | 1/1A/698:700, 1/1A/732:736, 1/1A/760:763 | No text annotation | homologous J3_5J7L_039 NA | |
J3_5KCR_006 | 1/1A/1298:1303, 1/1A/1625:1627, 1/1A/1639:1642 | No text annotation | homologous J3_5J7L_041 NA | |
J3_5KCR_007 | 1/1A/1306:1309, 1/1A/1605:1611, 1/1A/1620:1622 | No text annotation | homologous J3_5J7L_042 NA | |
J3_5KCR_008 | 1/1A/1344:1349, 1/1A/1382:1385, 1/1A/1402:1403 | No text annotation | homologous J3_5J7L_043 NA | |
J3_5KCR_028 | 1/1A/1424:1429, 1/1A/1564:1565, 1/1A/1568:1574 | No text annotation | homologous J3_5J7L_069 NA | |
J3_5KCR_009 | 1/1A/2091:2093, 1/1A/2196:2200, 1/1A/2223:2228 | Kink-turn 3-way junction | homologous J3_5J7L_044 NA | |
J3_5KCR_029 | 1/1A/2282:2284, 1/1A/2384:2395, 1/1A/2421:2427 | No text annotation | homologous J3_5J7L_070 NA | |
J3_5KCR_010 | 1/1A/2295:2297, 1/1A/2321:2323, 1/1A/2332:2337 | No text annotation | homologous J3_5J7L_045 NA | |
J3_5KCR_030 | 1/1A/2295:2299, 1/1A/2317:2323, 1/1A/2332:2337 | No text annotation | homologous J3_5J7L_071 NA | |
J3_5KCR_011 | 1/1A/2517:2520, 1/1A/2545:2547, 1/1A/2561:2567 | No text annotation | homologous J3_5J7L_046 NA | |
J3_5KCR_013 | 1/1A/2812:2815, 1/1A/2831:2836, 1/1A/2882:2888 | No text annotation | homologous J3_5J7L_048 NA | |
J3_5KCR_014 | 1/1B/10:16, 1/1B/68:70, 1/1B/106:110 | No text annotation | homologous J3_5J7L_049 NA | |
J3_5KCR_015 | 1/1a/46:47, 1/1a/361:367, 1/1a/393:395 | No text annotation | homologous J3_5J7L_001 NA | |
J3_5KCR_031 | 1/1a/46:47, 1/1a/361:369, 1/1a/392:395 | No text annotation | ||
J3_5KCR_032 | 1/1a/46:52, 1/1a/359:369, 1/1a/392:395 | No text annotation | ||
J3_5KCR_016 | 1/1a/586:588, 1/1a/651:654, 1/1a/754:755 | No text annotation | homologous J3_5J7L_002 NA | |
J3_5KCR_033 | 1/1a/586:588, 1/1a/651:655, 1/1a/751:755 | No text annotation | homologous J3_5J7L_051 NA | |
J3_5KCR_038 | 1/1a/672:673, 1/1a/717:725, 1/1a/732:734 | No text annotation | homologous J3_5J7L_003 NA | |
J3_5KCR_017 | 1/1a/826:829, 1/1a/857:861, 1/1a/868:874 | No text annotation | homologous J3_5J7L_004 NA | |
J3_5KCR_035 | 1/1a/936:939, 1/1a/1344:1350, 1/1a/1372:1379 | No text annotation | homologous J3_4LFB_002 J3_85722.1 | |
J3_5KCR_018 | 1/1a/943:946, 1/1a/1235:1237, 1/1a/1337:1340 | No text annotation | homologous J3_5J7L_005 NA | |
J3_5KCR_019 | 1/1a/955:962, 1/1a/973:984, 1/1a/1221:1225 | No text annotation | homologous J3_5J7L_006 NA | |
J3_5KCR_020 | 1/1a/990:993, 1/1a/1045:1047, 1/1a/1210:1215 | No text annotation | homologous J3_5J7L_007 NA | |
J3_5KCR_036 | 1/1a/990:997, 1/1a/1044:1047, 1/1a/1210:1215 | No text annotation | homologous J3_5J7L_053 NA | |
J3_5KCR_021 | 1/1a/1063:1068, 1/1a/1107:1113, 1/1a/1187:1193 | No text annotation | homologous J3_5J7L_008 NA | |
J3_5KCR_022 | 1/1a/1073:1074, 1/1a/1083:1087, 1/1a/1098:1102 | No text annotation | homologous J3_5J7L_009 NA | |
J3_5KCR_023 | 1/1a/1116:1118, 1/1a/1155:1158, 1/1a/1181:1184 | No text annotation | homologous J3_5J7L_010 NA | |
J3_5KCR_037 | 1/1a/1116:1118, 1/1a/1155:1161, 1/1a/1175:1184 | No text annotation | homologous J3_4LFB_018 J3_40706.1 | |
J3_5KCR_024 | 1/1a/1237:1241, 1/1a/1296:1303, 1/1a/1334:1337 | No text annotation | homologous J3_5J7L_011 NA | |
J4_5KCR_001 | 1/1A/268:269, 1/1A/370:375, 1/1A/399:406, 1/1A/421:424 | No text annotation | homologous J4_5J7L_018 NA | |
J4_5KCR_002 | 1/1A/297:301, 1/1A/316:319, 1/1A/323:325, 1/1A/337:341 | No text annotation | homologous J4_5J7L_019 NA | |
J4_5KCR_003 | 1/1A/601:604, 1/1A/624:628, 1/1A/635:638, 1/1A/650:656 | No text annotation | homologous J4_5J7L_020 NA | |
J4_5KCR_004 | 1/1A/1270:1276, 1/1A/1294:1295, 1/1A/1645:1648, 1/1A/2009:2010 | No text annotation | homologous J4_5J7L_021 NA | |
J4_5KCR_005 | 1/1A/1310:1314, 1/1A/1338:1343, 1/1A/1404:1405, 1/1A/1597:1604 | No text annotation | homologous J4_5J7L_022 NA | |
J4_5KCR_006 | 1/1A/1313:1314, 1/1A/1338:1343, 1/1A/1404:1405, 1/1A/1597:1603 | No text annotation | homologous J4_5J7L_023 NA | |
J4_5KCR_007 | 1/1A/1444:1445, 1/1A/1466:1467, 1/1A/1525:1526, 1/1A/1546:1547 | No text annotation | homologous J4_5J7L_024 NA | |
J4_5KCR_008 | 1/1A/1772:1776, 1/1A/1788:1792, 1/1A/1827:1830, 1/1A/1975:1979 | No text annotation | homologous J4_5J7L_025 NA | |
J4_5KCR_009 | 1/1A/1833:1835, 1/1A/1905:1906, 1/1A/1924:1933, 1/1A/1967:1972 | No text annotation | homologous J4_5J7L_026 NA | |
J4_5KCR_010 | 1/1A/2285:2289, 1/1A/2343:2347, 1/1A/2370:2372, 1/1A/2381:2383 | No text annotation | homologous J4_5J7L_027 NA | |
J4_5KCR_011 | 1/1A/2643:2646, 1/1A/2674:2676, 1/1A/2731:2735, 1/1A/2769:2771 | No text annotation | homologous J4_5J7L_028 NA | |
J4_5KCR_012 | 1/1a/115:122, 1/1a/239:240, 1/1a/286:289, 1/1a/311:312 | No text annotation | homologous J4_5J7L_001 NA | |
J4_5KCR_014 | 1/1a/569:577, 1/1a/764:769, 1/1a/810:821, 1/1a/879:881 | No text annotation | ||
J5_5KCR_001 | 1/1A/47:54, 1/1A/116:121, 1/1A/130:131, 1/1A/148:150, 1/1A/176:178 | No text annotation | homologous J5_5J7L_013 NA | |
J5_5KCR_002 | 1/1A/531:533, 1/1A/560:564, 1/1A/577:579, 1/1A/1261:1262, 1/1A/2017:2018 | No text annotation | homologous J5_5J7L_014 NA | |
J5_5KCR_003 | 1/1A/584:589, 1/1A/668:671, 1/1A/809:812, 1/1A/1195:1196, 1/1A/1250:1256 | No text annotation | homologous J5_5J7L_015 NA | |
J5_5KCR_004 | 1/1A/1674:1682, 1/1A/1706:1707, 1/1A/1751:1752, 1/1A/1756:1764, 1/1A/1988:1990 | No text annotation | homologous J5_5J7L_016 NA | |
J5_5KCR_005 | 1/1A/2057:2064, 1/1A/2446:2453, 1/1A/2500:2506, 1/1A/2583:2588, 1/1A/2606:2611 | No text annotation | ||
J5_5KCR_006 | 1/1A/2074:2077, 1/1A/2243:2246, 1/1A/2258:2259, 1/1A/2281:2282, 1/1A/2427:2435 | No text annotation | ||
J5_5KCR_007 | 1/1a/36:39, 1/1a/403:406, 1/1a/436:440, 1/1a/497:500, 1/1a/545:548 | No text annotation | homologous J5_5J7L_001 NA | |
J5_5KCR_008 | 1/1a/36:39, 1/1a/403:406, 1/1a/436:442, 1/1a/492:500, 1/1a/545:548 | No text annotation | homologous J5_5J7L_002 NA | |
J5_5KCR_009 | 1/1a/58:61, 1/1a/106:113, 1/1a/314:316, 1/1a/337:339, 1/1a/350:354 | No text annotation | homologous J5_5J7L_003 NA | |
J6_5KCR_001 | 1/1A/45:46, 1/1A/179:183, 1/1A/214:224, 1/1A/231:235, 1/1A/262:266, 1/1A/426:433 | No text annotation | ||
J6_5KCR_002 | 1/1A/2074:2077, 1/1A/2243:2246, 1/1A/2258:2259, 1/1A/2281:2284, 1/1A/2384:2395, 1/1A/2421:2435 | No text annotation | ||
J7_5KCR_001 | 1/1A/8:15, 1/1A/525:531, 1/1A/2018:2023, 1/1A/2040:2043, 1/1A/2625:2630, 1/1A/2788:2789, 1/1A/2894:2895 | No text annotation | ||
J7_5KCR_002 | 1/1A/817:822, 1/1A/835:837, 1/1A/942:946, 1/1A/971:976, 1/1A/987:991, 1/1A/1163:1164, 1/1A/1185:1190 | No text annotation |
Problematic loops
# | loop id | Problem | Sequence |
---|---|---|---|
J3_5KCR_005 | No text annotation | ||
J3_5KCR_012 | No text annotation | ||
J3_5KCR_034 | No text annotation | ||
J4_5KCR_013 | No text annotation | ||
J5_5KCR_010 | No text annotation |
Coloring options: