Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_5KCR_0011/1A/59:68No text annotation
homologous
HL_5J7L_134
NA
HL_5KCR_0021/1A/87:95No text annotation
homologous
HL_5J7L_135
NA
HL_5KCR_0031/1A/123:128No text annotation
homologous
HL_5J7L_136
NA
HL_5KCR_0061/1A/194:201No text annotation
geometric
HL_5J7L_139
NA
HL_5KCR_0071/1A/225:230No text annotation
homologous
HL_5J7L_140
NA
HL_5KCR_0081/1A/246:252No text annotation
homologous
HL_5J7L_141
NA
HL_5KCR_0091/1A/305:312T-loop with 2 stacked bulged bases
homologous
HL_5J7L_142
NA
HL_5KCR_0101/1A/319:323No text annotation
homologous
HL_5J7L_143
NA
HL_5KCR_0111/1A/327:335T-loop with unstacked turn
homologous
HL_5J7L_144
NA
HL_5KCR_0121/1A/382:392No text annotation
homologous
HL_5J7L_145
NA
HL_5KCR_0131/1A/410:417Pseudoknot geometry
homologous
HL_5J7L_146
NA
HL_5KCR_0141/1A/462:467GNRA
homologous
HL_7RQB_015
NA
HL_5KCR_0151/1A/487:493GNRA
homologous
HL_5J7L_148
NA
HL_5KCR_0171/1A/566:575T-loop with 2 stacked bulged bases
homologous
HL_5J7L_150
NA
HL_5KCR_0181/1A/611:617No text annotation
homologous
HL_5J7L_151
NA
HL_5KCR_0191/1A/629:634GNRA
homologous
HL_5J7L_152
NA
HL_5KCR_0201/1A/641:647No text annotation
homologous
HL_5J7L_153
NA
HL_5KCR_0221/1A/744:753No text annotation
homologous
HL_5J7L_155
NA
HL_5KCR_0231/1A/779:785No text annotation
homologous
HL_5J7L_156
NA
HL_5KCR_0241/1A/826:831No text annotation
homologous
HL_7RQB_025
NA
HL_5KCR_1071/1A/955:962GNRA
homologous
HL_5J7L_211
NA
HL_5KCR_0271/1A/978:985No text annotation
homologous
HL_5J7L_160
NA
HL_5KCR_0311/1A/1222:1227GNRA
homologous
HL_5J7L_164
NA
HL_5KCR_0321/1A/1281:1289T-loop with 2 stacked bulged bases
homologous
HL_5J7L_165
NA
HL_5KCR_0331/1A/1324:1330Pseudoknot geometry with 3' bulge
homologous
HL_5J7L_166
NA
HL_5KCR_0341/1A/1363:1368GNRA
homologous
HL_5J7L_167
NA
HL_5KCR_0351/1A/1389:1398No text annotation
homologous
HL_5J7L_168
NA
HL_5KCR_0361/1A/1451:1459Mini UNCG with extended bulge
geometric
HL_5J7L_169
NA
HL_5KCR_0371/1A/1492:1498Pseudoknot geometry with 3' bulge
homologous
HL_5J7L_170
NA
HL_5KCR_0391/1A/1565:1568No text annotation
homologous
HL_7RQB_039
NA
HL_5KCR_0401/1A/1612:1619No text annotation
homologous
HL_5J7L_173
NA
HL_5KCR_0411/1A/1630:1636GNRA
homologous
HL_5J7L_174
NA
HL_5KCR_0421/1A/1691:1696UNCG
geometric
HL_5J7L_175
NA
HL_5KCR_1081/1A/1727:1733No text annotation
homologous
HL_5J7L_214
NA
HL_5KCR_0441/1A/1752:1756No text annotation
homologous
HL_5J7L_177
NA
HL_5KCR_0451/1A/1777:1787No text annotation
homologous
HL_5J7L_178
NA
HL_5KCR_0461/1A/1806:1811GNRA related
homologous
HL_5J7L_179
NA
HL_5KCR_0481/1A/1910:1920No text annotation
homologous
HL_5J7L_181
NA
HL_5KCR_0491/1A/1949:1957No text annotation
homologous
HL_7RQB_049
NA
HL_5KCR_0501/1A/2027:2036No text annotation
homologous
HL_5J7L_183
NA
HL_5KCR_0521/1A/2209:2215No text annotation
homologous
HL_5J7L_185
NA
HL_5KCR_0531/1A/2248:2256No text annotation
homologous
HL_5J7L_186
NA
HL_5KCR_0541/1A/2264:2276No text annotation
homologous
HL_5J7L_187
NA
HL_5KCR_0561/1A/2324:2331Pseudoknot geometry
homologous
HL_5J7L_189
NA
HL_5KCR_0571/1A/2356:2361GNRA
homologous
HL_5J7L_190
NA
HL_5KCR_0581/1A/2374:2379GNRA
homologous
HL_5J7L_191
NA
HL_5KCR_0591/1A/2404:2413No text annotation
homologous
HL_5J7L_192
NA
HL_5KCR_0601/1A/2471:2479No text annotation
homologous
HL_5J7L_193
NA
HL_5KCR_0611/1A/2528:2535GNRA variation
homologous
HL_5J7L_194
NA
HL_5KCR_0621/1A/2551:2557No text annotation
homologous
HL_5J7L_195
NA
HL_5KCR_0631/1A/2594:2599GNRA
homologous
HL_5J7L_196
NA
HL_5KCR_0641/1A/2658:2663GNRA
homologous
HL_5J7L_197
NA
HL_5KCR_0651/1A/2701:2706Ribsomal LSU H95
homologous
HL_5J7L_198
NA
HL_5KCR_0661/1A/2745:2759No text annotation
homologous
HL_5J7L_199
NA
HL_5KCR_0681/1A/2819:2827No text annotation
homologous
HL_5J7L_201
NA
HL_5KCR_0691/1A/2856:2861GNRA
homologous
HL_5J7L_202
NA
HL_5KCR_1091/1B/34:48No text annotation
homologous
HL_5J7L_215
NA
HL_5KCR_0711/1B/86:90Mini UNCG
homologous
HL_5J7L_204
NA
HL_5KCR_0721/1a/12:22No text annotation
homologous
HL_4LFB_001
HL_73535.1
HL_5KCR_0741/1a/158:163GNRA
homologous
HL_5J7L_003
NA
HL_5KCR_0751/1a/186:191GNRA
homologous
HL_5J7L_004
NA
HL_5KCR_0771/1a/259:267GNRA related
homologous
HL_5J7L_006
NA
HL_5KCR_0781/1a/296:301GNRA
homologous
HL_5J7L_007
NA
HL_5KCR_0791/1a/320:333No text annotation
homologous
HL_4LFB_008
HL_39665.1
HL_5KCR_0801/1a/342:347UNCG
homologous
HL_4LFB_009
HL_61337.2
HL_5KCR_0811/1a/379:384GNRA
homologous
HL_5J7L_010
NA
HL_5KCR_0821/1a/419:424UNCG
homologous
HL_4LFB_011
HL_61337.2
HL_5KCR_0841/1a/522:527No text annotation
geometric
HL_4WF9_003
HL_75660.7
HL_5KCR_0851/1a/617:623GNRA-like with tWH
homologous
HL_4LFB_014
HL_86621.1
HL_5KCR_0861/1a/689:698No text annotation
homologous
HL_5J7L_015
NA
HL_5KCR_0871/1a/726:731GNRA
homologous
HL_5J7L_016
NA
HL_5KCR_0881/1a/786:796No text annotation
homologous
HL_5J7L_017
NA
HL_5KCR_0901/1a/862:867GNRA
homologous
HL_5J7L_019
NA
HL_5KCR_0911/1a/897:902GNRA
homologous
HL_4LFB_020
HL_34789.2
HL_5KCR_0921/1a/963:972No text annotation
homologous
HL_5J7L_021
NA
HL_5KCR_0941/1a/1076:1081GNRA
homologous
HL_5J7L_023
NA
HL_5KCR_0951/1a/1089:1096T-loop related
homologous
HL_5J7L_024
NA
HL_5KCR_0981/1a/1265:1270GNRA
homologous
HL_5J7L_027
NA
HL_5KCR_0991/1a/1314:1323T-loop with 3 stacked bulged bases
homologous
HL_5J7L_028
NA
HL_5KCR_1001/1a/1356:1366No text annotation
homologous
HL_4LFB_030
HL_86432.1
HL_5KCR_1011/1a/1449:1454UNCG
homologous
HL_5J7L_030
NA
HL_5KCR_1021/1a/1515:1520GNRA
homologous
HL_5J7L_031
NA
HL_5KCR_1041/1x/32:40tRNA anticodon loop
homologous
HL_3TUP_002
HL_81376.2

Problematic loops

#loop idProblemSequence
HL_5KCR_004No text annotation
HL_5KCR_113No text annotation
HL_5KCR_005No text annotation
HL_5KCR_016No text annotation
HL_5KCR_021GNRA wlth tandem sheared
HL_5KCR_025No text annotation
HL_5KCR_026No text annotation
HL_5KCR_028No text annotation
HL_5KCR_029GNRA wlth tandem sheared
HL_5KCR_030No text annotation
HL_5KCR_114No text annotation
HL_5KCR_038UNCG
HL_5KCR_043No text annotation
HL_5KCR_047GNRA variation
HL_5KCR_051No text annotation
HL_5KCR_055No text annotation
HL_5KCR_115No text annotation
HL_5KCR_067UNCG variation
HL_5KCR_070No text annotation
HL_5KCR_073No text annotation
HL_5KCR_116No text annotation
HL_5KCR_076UNCG
HL_5KCR_083GNRA wlth extra near cWW
HL_5KCR_089No text annotation
HL_5KCR_093GNRA
HL_5KCR_110No text annotation
HL_5KCR_096No text annotation
HL_5KCR_097GNRA
HL_5KCR_103No text annotation
HL_5KCR_111No text annotation
HL_5KCR_112No text annotation
HL_5KCR_105GNRA with extra near cWW
HL_5KCR_106T-loop with 2 stacked bulged bases

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_5KCR_0011/1A/24:30,
1/1A/510:516
Triple sheared with non-canonical cWW
homologous
IL_5J7L_245
NA
IL_5KCR_0021/1A/36:37,
1/1A/442:444
Single bulged A
homologous
IL_5J7L_246
NA
IL_5KCR_0041/1A/81:85,
1/1A/97:105
No text annotation
homologous
IL_5J7L_248
NA
IL_5KCR_0051/1A/183:184,
1/1A/212:214
Single stack bend
homologous
IL_5J7L_249
NA
IL_5KCR_0061/1A/188:194,
1/1A/201:208
8x7 Sarcin-Ricin; G-bulge
homologous
IL_5J7L_250
NA
IL_5KCR_0071/1A/239:245,
1/1A/253:258
7x6 Sarcin-Ricin; G-bulge
homologous
IL_5J7L_251
NA
IL_5KCR_0081/1A/269:271,
1/1A/366:370
No text annotation
homologous
IL_5J7L_252
NA
IL_5KCR_0101/1A/293:295,
1/1A/343:347
No text annotation
homologous
IL_5J7L_254
NA
IL_5KCR_0111/1A/481:484,
1/1A/496:509
No text annotation
geometric
IL_5J7L_255
NA
IL_5KCR_0121/1A/536:539,
1/1A/554:557
Double sheared
homologous
IL_5J7L_256
NA
IL_5KCR_0131/1A/564:566,
1/1A/575:577
Isolated non-canonical cWW pair
geometric
IL_5J7L_257
NA
IL_5KCR_0141/1A/606:610,
1/1A/618:622
AAA cross-strand stack
homologous
IL_5J7L_258
NA
IL_5KCR_0151/1A/672:674,
1/1A/806:808
Isolated non-canonical cWW pair
geometric
IL_5J7L_259
NA
IL_5KCR_0161/1A/674:678,
1/1A/799:806
tHW-tHW cross-strand stack
homologous
IL_5J7L_260
NA
IL_5KCR_0171/1A/697:698,
1/1A/763:765
Single bulged A
geometric
IL_5J7L_261
NA
IL_5KCR_0181/1A/702:703,
1/1A/728:730
Single bulged G
geometric
IL_5J7L_262
NA
IL_5KCR_0191/1A/703:707,
1/1A/724:728
Triple sheared
homologous
IL_5J7L_263
NA
IL_5KCR_0201/1A/738:740,
1/1A/757:758
Major groove platform
homologous
IL_5J7L_264
NA
IL_5KCR_0211/1A/775:777,
1/1A/787:791
Multiple bulged bases
geometric
IL_5J7L_265
NA
IL_5KCR_0221/1A/837:838,
1/1A/940:942
Single stack bend
homologous
IL_5J7L_266
NA
IL_5KCR_0231/1A/844:847,
1/1A/933:934
90 degree turn
geometric
IL_5J7L_267
NA
IL_5KCR_1811/1A/844:848,
1/1A/930:934
No text annotation
geometric
IL_5J7L_399
NA
IL_5KCR_0241/1A/847:848,
1/1A/930:933
Stack outside cWW
geometric
IL_5J7L_268
NA
IL_5KCR_0251/1A/850:851,
1/1A/926:928
Single stack bend
homologous
IL_5J7L_269
NA
IL_5KCR_0261/1A/856:862,
1/1A/915:921
7x7 Sarcin-Ricin with intercalated A; G-bulge
homologous
IL_5J7L_270
NA
IL_5KCR_0271/1A/862:863,
1/1A/913:915
Single bulged G
geometric
IL_5J7L_271
NA
IL_5KCR_0281/1A/864:868,
1/1A/909:912
C-loop with bulged stacked A's
homologous
IL_5J7L_272
NA
IL_5KCR_0291/1A/870:872,
1/1A/905:907
Isolated non-canonical cWW pair
homologous
IL_5J7L_273
NA
IL_5KCR_0321/1A/994:996,
1/1A/1159:1160
Single bulged C
homologous
IL_5J7L_276
NA
IL_5KCR_0331/1A/998:1002,
1/1A/1153:1157
UAA/GAN
homologous
IL_5J7L_277
NA
IL_5KCR_0341/1A/1004:1011,
1/1A/1150:1151
SSU/LSU pseudoknot
geometric
IL_5J7L_278
NA
IL_5KCR_0351/1A/1011:1013,
1/1A/1149:1150
Single bulged U
homologous
IL_5J7L_279
NA
IL_5KCR_0361/1A/1018:1024,
1/1A/1140:1144
Kink-turn related
geometric
IL_5J7L_280
NA
IL_5KCR_0371/1A/1024:1030,
1/1A/1124:1140
No text annotation
geometric
IL_5J7L_281
NA
IL_5KCR_0381/1A/1031:1034,
1/1A/1121:1123
Isolated non-canonical cWW pair
homologous
IL_5J7L_282
NA
IL_5KCR_0391/1A/1038:1041,
1/1A/1114:1117
Tandem non-canonical cWW pairs
homologous
IL_5J7L_283
NA
IL_5KCR_0431/1A/1196:1198,
1/1A/1247:1250
Isolated cWS basepair
homologous
IL_5J7L_286
NA
IL_5KCR_0441/1A/1202:1206,
1/1A/1240:1243
No text annotation
homologous
IL_5J7L_287
NA
IL_5KCR_0451/1A/1208:1215,
1/1A/1234:1238
Kink-turn
homologous
IL_5J7L_288
NA
IL_5KCR_0461/1A/1262:1269,
1/1A/2011:2017
8x7 Sarcin-Ricin; G-bulge
homologous
IL_5J7L_289
NA
IL_5KCR_0471/1A/1310:1313,
1/1A/1603:1604
Major groove platform; stack outside cWW
homologous
IL_5J7L_290
NA
IL_5KCR_0481/1A/1319:1323,
1/1A/1331:1333
C-loop
homologous
IL_5J7L_291
NA
IL_5KCR_0491/1A/1351:1355,
1/1A/1376:1380
UAA/GAN
homologous
IL_5J7L_292
NA
IL_5KCR_0501/1A/1357:1361,
1/1A/1370:1374
tSH-tHW-tHS
homologous
IL_5J7L_293
NA
IL_5KCR_0531/1A/1432:1435,
1/1A/1557:1561
Tandem non-canonical cWW pairs
homologous
IL_5J7L_296
NA
IL_5KCR_0541/1A/1437:1440,
1/1A/1551:1555
tSH-tHW
homologous
IL_5J7L_297
NA
IL_5KCR_0551/1A/1450:1451,
1/1A/1459:1461
Single bulged U
homologous
IL_5J7L_298
NA
IL_5KCR_0561/1A/1468:1471,
1/1A/1520:1524
No text annotation
homologous
IL_5J7L_299
NA
IL_5KCR_0571/1A/1474:1478,
1/1A/1513:1517
tSH-tHW-tHS
homologous
IL_5J7L_300
NA
IL_5KCR_0581/1A/1481:1482,
1/1A/1507:1510
180 degree turn
homologous
IL_5J7L_301
NA
IL_5KCR_0591/1A/1489:1491,
1/1A/1499:1500
Single bulged A
homologous
IL_5J7L_302
NA
IL_5KCR_0601/1A/1526:1529,
1/1A/1542:1546
UAA/GAN variation
homologous
IL_5J7L_303
NA
IL_5KCR_0611/1A/1651:1656,
1/1A/2004:2006
No text annotation
homologous
IL_5J7L_304
NA
IL_5KCR_0621/1A/1663:1665,
1/1A/1995:1997
Isolated tWW turn
homologous
IL_5J7L_305
NA
IL_5KCR_0631/1A/1666:1669,
1/1A/1993:1994
Major groove platform; stack outside cWW
geometric
IL_5J7L_306
NA
IL_5KCR_1851/1A/1666:1674,
1/1A/1990:1994
No text annotation
homologous
IL_5J7L_386
NA
IL_5KCR_0641/1A/1669:1674,
1/1A/1990:1993
Intercalated tWH
homologous
IL_5J7L_307
NA
IL_5KCR_0651/1A/1686:1691,
1/1A/1696:1702
tSH-tSH-tHH-tHS
homologous
IL_5J7L_308
NA
IL_5KCR_0661/1A/1712:1718,
1/1A/1742:1746
6x5 Sarcin-Ricin; G-bulge
homologous
IL_5J7L_309
NA
IL_5KCR_0671/1A/1720:1724,
1/1A/1736:1740
Triple sheared
homologous
IL_5J7L_310
NA
IL_5KCR_0681/1A/1727:1728,
1/1A/1731:1733
Single bulged C
homologous
IL_5J7L_311
NA
IL_5KCR_0691/1A/1770:1771,
1/1A/1980:1982
Single bulged A
homologous
IL_5J7L_312
NA
IL_5KCR_0701/1A/1798:1804,
1/1A/1813:1821
Kink-turn related
homologous
IL_5J7L_313
NA
IL_5KCR_0711/1A/1837:1840,
1/1A/1902:1903
Minor groove platform, major groove intercalation
homologous
IL_5J7L_314
NA
IL_5KCR_0721/1A/1841:1842,
1/1A/1898:1901
Major groove intercalation
homologous
IL_5J7L_315
NA
IL_5KCR_0731/1A/1846:1849,
1/1A/1893:1894
Major groove minor groove platform; mini C-loop
homologous
IL_5J7L_316
NA
IL_5KCR_1861/1A/1851:1860,
1/1A/1882:1891
No text annotation
homologous
IL_5J7L_387
NA
IL_5KCR_0741/1A/1864:1867,
1/1A/1874:1878
UAA/GAN related
homologous
IL_5J7L_317
NA
IL_5KCR_0751/1A/1933:1934,
1/1A/1964:1967
Bulged stacked bases
homologous
IL_7RQB_076
NA
IL_5KCR_0761/1A/1934:1945,
1/1A/1961:1964
No text annotation
geometric
IL_7A0S_072
IL_04332.3
IL_5KCR_0771/1A/2050:2052,
1/1A/2617:2618
Major groove platform
homologous
IL_5J7L_320
NA
IL_5KCR_0781/1A/2054:2056,
1/1A/2612:2615
No text annotation
homologous
IL_5J7L_321
NA
IL_5KCR_1871/1A/2067:2069,
1/1A/2442:2443
Single bulged U
homologous
IL_5J7L_388
NA
IL_5KCR_0811/1A/2070:2071,
1/1A/2438:2441
Minor groove platform
geometric
IL_7RQB_081
NA
IL_5KCR_0821/1A/2081:2083,
1/1A/2236:2239
Isolated tHS basepair with bulges
homologous
IL_5J7L_325
NA
IL_5KCR_0831/1A/2085:2087,
1/1A/2232:2234
Isolated non-canonical cWW pair
homologous
IL_5J7L_326
NA
IL_5KCR_0881/1A/2202:2204,
1/1A/2220:2221
Single bulged U
homologous
IL_5J7L_331
NA
IL_5KCR_0901/1A/2350:2353,
1/1A/2364:2367
Double sheared
homologous
IL_5J7L_333
NA
IL_5KCR_1891/1A/2453:2454,
1/1A/2498:2500
Single stack bend
homologous
IL_5J7L_391
NA
IL_5KCR_1901/1A/2454:2455,
1/1A/2496:2498
Major groove platform
homologous
IL_5J7L_392
NA
IL_5KCR_1911/1A/2457:2459,
1/1A/2493:2494
Major groove platform
homologous
IL_5J7L_393
NA
IL_5KCR_0941/1A/2459:2461,
1/1A/2489:2493
Major groove minor groove platform with extra cWW
homologous
IL_5J7L_337
NA
IL_5KCR_0951/1A/2466:2470,
1/1A/2480:2484
Double sheared with non-canonical cWW
homologous
IL_5J7L_338
NA
IL_5KCR_1921/1A/2507:2508,
1/1A/2580:2582
Major groove platform
homologous
IL_5J7L_394
NA
IL_5KCR_0971/1A/2510:2512,
1/1A/2574:2578
Isolated non-canonical cWW with bulges
geometric
IL_5J7L_340
NA
IL_5KCR_0981/1A/2512:2513,
1/1A/2571:2574
No text annotation
homologous
IL_5J7L_341
NA
IL_5KCR_0991/1A/2522:2523,
1/1A/2540:2543
Major groove platform with intercalation
homologous
IL_5J7L_342
NA
IL_5KCR_1011/1A/2591:2592,
1/1A/2601:2603
Single bulged A
homologous
IL_5J7L_344
NA
IL_5KCR_1021/1A/2636:2640,
1/1A/2774:2782
tSH-tHS-tHW
homologous
IL_5J7L_345
NA
IL_5KCR_1031/1A/2652:2658,
1/1A/2663:2668
Sarcin-Ricin target in LSU H95; G-bulge
geometric
IL_5J7L_346
NA
IL_5KCR_1041/1A/2680:2684,
1/1A/2725:2727
C-loop
homologous
IL_5J7L_347
NA
IL_5KCR_1051/1A/2687:2691,
1/1A/2718:2722
UAA/GAN related, with intercalation
homologous
IL_5J7L_348
NA
IL_5KCR_1061/1A/2695:2696,
1/1A/2711:2714
Multiple bulged bases
homologous
IL_5J7L_349
NA
IL_5KCR_1071/1A/2737:2742,
1/1A/2762:2767
UAA/GAN with extra cWW
homologous
IL_5J7L_350
NA
IL_5KCR_1091/1A/2838:2839,
1/1A/2878:2880
Major groove intercalation
homologous
IL_5J7L_352
NA
IL_5KCR_1101/1A/2843:2846,
1/1A/2870:2874
Multiple bulged bases with non-canonical cWW
homologous
IL_5J7L_353
NA
IL_5KCR_1111/1A/2847:2852,
1/1A/2865:2869
tHS double platform
homologous
IL_5J7L_354
NA
IL_5KCR_1121/1B/17:18,
1/1B/65:67
Major groove intercalation
homologous
IL_5J7L_355
NA
IL_5KCR_1151/1B/34:38,
1/1B/44:48
Symmetric double minor groove platform
homologous
IL_5J7L_358
NA
IL_5KCR_1161/1B/71:79,
1/1B/97:105
Bacterial 5S Loop E
homologous
IL_5J7L_359
NA
IL_5KCR_1171/1a/30:32,
1/1a/552:553
Single bulged G
homologous
IL_6CZR_113
NA
IL_5KCR_1181/1a/44:45,
1/1a/396:398
Single bulged A
homologous
IL_5J7L_002
NA
IL_5KCR_1191/1a/47:52,
1/1a/359:361
No text annotation
geometric
IL_5J7L_003
NA
IL_5KCR_1201/1a/54:56,
1/1a/356:357
Minor groove platform
homologous
IL_4LFB_004
IL_34520.2
IL_5KCR_1211/1a/63:66,
1/1a/103:104
Multiple bulged bases
homologous
IL_4LFB_005
IL_71421.2
IL_5KCR_1251/1a/128:131,
1/1a/231:233
Isolated non-canonical cWW pair
homologous
IL_5J7L_009
NA
IL_5KCR_1261/1a/132:136,
1/1a/227:230
Minor groove platform related
homologous
IL_5J7L_010
NA
IL_5KCR_1281/1a/147:153,
1/1a/168:175
tWH-tWH-tHW-tHW
homologous
IL_5J7L_012
NA
IL_5KCR_1301/1a/242:247,
1/1a/277:284
Kink-turn with non-sequential stacking
homologous
IL_5J7L_014
NA
IL_5KCR_1311/1a/249:252,
1/1a/274:275
No text annotation
homologous
IL_5J7L_015
NA
IL_5KCR_1321/1a/292:293,
1/1a/304:308
C-loop
homologous
IL_5J7L_016
NA
IL_5KCR_1331/1a/367:369,
1/1a/392:393
Single bulged U
geometric
IL_5J7L_017
NA
IL_5KCR_1341/1a/371:375,
1/1a/389:390
C-loop
homologous
IL_5J7L_018
NA
IL_5KCR_1351/1a/375:376,
1/1a/387:389
Single bulged G
geometric
IL_5J7L_019
NA
IL_5KCR_1371/1a/440:442,
1/1a/492:497
No text annotation
homologous
IL_5J7L_021
NA
IL_5KCR_1381/1a/446:450,
1/1a/483:488
tSH-tHW-tWW
homologous
IL_5J7L_022
NA
IL_5KCR_1391/1a/450:455,
1/1a/477:483
No text annotation
homologous
IL_4LFB_019
IL_31561.1
IL_5KCR_1401/1a/504:511,
1/1a/540:541
SSU/LSU pseudoknot
homologous
IL_4LFB_020
IL_11411.1
IL_5KCR_1411/1a/515:521,
1/1a/528:536
Kink-turn related
geometric
IL_4V88_415
NA
IL_5KCR_1421/1a/580:584,
1/1a/757:761
tSH-tHW-tHS
homologous
IL_5J7L_027
NA
IL_5KCR_1441/1a/597:598,
1/1a/640:643
Major groove minor groove platform; mini C-loop
homologous
IL_4LFB_025
IL_73108.2
IL_5KCR_1451/1a/605:612,
1/1a/628:633
No text annotation
homologous
IL_5J7L_030
NA
IL_5KCR_1461/1a/654:655,
1/1a/751:754
Major groove platform; stack outside cWW
geometric
IL_4LFB_027
IL_74641.2
IL_5KCR_1471/1a/658:659,
1/1a/746:748
Single stack bend
homologous
IL_5J7L_032
NA
IL_5KCR_1481/1a/662:666,
1/1a/740:743
Tandem non-canonical cWW pairs
homologous
IL_5J7L_033
NA
IL_5KCR_1941/1a/673:677,
1/1a/713:717
Triple non-canonical cWW pairs
geometric
IL_4LFB_065
IL_71154.2
IL_5KCR_1491/1a/684:688,
1/1a/699:706
Kink-turn
homologous
IL_5J7L_035
NA
IL_5KCR_1501/1a/774:778,
1/1a/804:805
Left turn
homologous
IL_4LFB_032
IL_29346.3
IL_5KCR_1511/1a/779:783,
1/1a/799:803
tSH-tHW-tHS
homologous
IL_4LFB_033
IL_05821.1
IL_5KCR_1521/1a/887:894,
1/1a/905:910
8x6 Sarcin-Ricin with inserted Y; G-bulge
homologous
IL_5J7L_038
NA
IL_5KCR_1531/1a/922:923,
1/1a/1393:1395
Single bulged A
homologous
IL_5J7L_039
NA
IL_5KCR_1541/1a/925:927,
1/1a/1390:1391
Single bulged G
homologous
IL_4LFB_036
IL_28408.2
IL_5KCR_1551/1a/933:935,
1/1a/1380:1384
Minor groove platform
homologous
IL_4LFB_037
IL_61370.1
IL_5KCR_1561/1a/953:954,
1/1a/1226:1228
Minor groove platform
homologous
IL_5J7L_042
NA
IL_5KCR_1601/1a/1048:1050,
1/1a/1208:1209
Single bulged U
homologous
IL_5J7L_046
NA
IL_5KCR_1611/1a/1052:1056,
1/1a/1204:1206
Isolated cWS basepair
homologous
IL_4LFB_044
IL_82453.1
IL_5KCR_1621/1a/1057:1058,
1/1a/1199:1203
Minor groove platform
homologous
IL_4LFB_045
IL_24264.1
IL_5KCR_1631/1a/1060:1061,
1/1a/1195:1197
Single bulged A
homologous
IL_5J7L_049
NA
IL_5KCR_1641/1a/1061:1063,
1/1a/1193:1195
Isolated non-canonical cWW pair
geometric
IL_4LFB_047
IL_68118.2
IL_5KCR_1651/1a/1124:1128,
1/1a/1144:1149
No text annotation
homologous
IL_5J7L_051
NA
IL_5KCR_1671/1a/1158:1161,
1/1a/1175:1181
No text annotation
geometric
IL_4LFB_050
IL_32376.1
IL_5KCR_1681/1a/1247:1253,
1/1a/1284:1290
No text annotation
homologous
IL_5J7L_054
NA
IL_5KCR_1691/1a/1255:1258,
1/1a/1277:1282
180 degree turn
homologous
IL_5J7L_055
NA
IL_5KCR_1701/1a/1259:1263,
1/1a/1272:1276
Double sheared with non-canonical cWW
homologous
IL_5J7L_056
NA
IL_5KCR_1711/1a/1303:1308,
1/1a/1329:1334
No text annotation
homologous
IL_5J7L_057
NA
IL_5KCR_1721/1a/1399:1401,
1/1a/1501:1504
No text annotation
homologous
IL_5J7L_058
NA
IL_5KCR_1731/1a/1401:1404,
1/1a/1497:1501
No text annotation
homologous
IL_5J7L_059
NA
IL_5KCR_1741/1a/1405:1407,
1/1a/1494:1496
Isolated non-canonical cWW pair
geometric
IL_3BNR_012
IL_71625.2
IL_5KCR_1751/1a/1407:1409,
1/1a/1491:1494
Isolated non-canonical cWW pair
geometric
IL_5J7L_009
NA
IL_5KCR_1761/1a/1412:1414,
1/1a/1486:1488
Isolated non-canonical cWW pair
homologous
IL_5J7L_061
NA
IL_5KCR_1771/1a/1416:1419,
1/1a/1481:1484
Double sheared
homologous
IL_6CZR_169
NA
IL_5KCR_1781/1a/1430:1435,
1/1a/1466:1470
Triple sheared related
homologous
IL_5J7L_063
NA
IL_5KCR_1791/1a/1440:1442,
1/1a/1460:1461
Single bulged A
homologous
IL_5J7L_064
NA
IL_5KCR_1801/1a/1445:1448,
1/1a/1455:1457
No text annotation
homologous
IL_5J7L_065
NA

Problematic loops

#loop idProblemSequence
IL_5KCR_003Minor groove platform
IL_5KCR_009No text annotation
IL_5KCR_030Double sheared with non-canonical cWW
IL_5KCR_182No text annotation
IL_5KCR_031Other IL
IL_5KCR_040Kink-turn
IL_5KCR_041No text annotation
IL_5KCR_183Major groove platform
IL_5KCR_042Major groove platform with extra cWW
IL_5KCR_184No text annotation
IL_5KCR_051No text annotation
IL_5KCR_052UAA/GAN
IL_5KCR_079No text annotation
IL_5KCR_080No text annotation
IL_5KCR_084No text annotation
IL_5KCR_188No text annotation
IL_5KCR_193No text annotation
IL_5KCR_085No text annotation
IL_5KCR_086Kink-turn related
IL_5KCR_087Kink-turn
IL_5KCR_089No text annotation
IL_5KCR_091Single bulged U
IL_5KCR_092No text annotation
IL_5KCR_093Major groove platform with extra pair
IL_5KCR_096No text annotation
IL_5KCR_100No text annotation
IL_5KCR_108No text annotation
IL_5KCR_113No text annotation
IL_5KCR_114Major groove minor groove platform; mini C-loop
IL_5KCR_122Minor groove platform with extra cWW
IL_5KCR_123Minor groove platform
IL_5KCR_124Major groove intercalation
IL_5KCR_127Isolated cWH basepair
IL_5KCR_129No text annotation
IL_5KCR_136No text annotation
IL_5KCR_143Major groove platform
IL_5KCR_157Minor groove platform
IL_5KCR_158Single stack bend
IL_5KCR_159No text annotation
IL_5KCR_166Minor groove platform

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_5KCR_0011/1A/30:31,
1/1A/474:481,
1/1A/509:510
No text annotation
homologous
J3_5J7L_036
NA
J3_5KCR_0251/1A/30:31,
1/1A/474:484,
1/1A/496:510
No text annotation
homologous
J3_5J7L_066
NA
J3_5KCR_0261/1A/32:35,
1/1A/445:461,
1/1A/468:473
No text annotation
homologous
J3_5J7L_067
NA
J3_5KCR_0021/1A/56:57,
1/1A/70:76,
1/1A/110:114
No text annotation
homologous
J3_5J7L_037
NA
J3_5KCR_0271/1A/297:301,
1/1A/316:325,
1/1A/337:341
No text annotation
homologous
J3_5J7L_068
NA
J3_5KCR_0031/1A/683:689,
1/1A/773:775,
1/1A/791:794
No text annotation
homologous
J3_7RQB_004
NA
J3_5KCR_0041/1A/698:700,
1/1A/732:736,
1/1A/760:763
No text annotation
homologous
J3_5J7L_039
NA
J3_5KCR_0061/1A/1298:1303,
1/1A/1625:1627,
1/1A/1639:1642
No text annotation
homologous
J3_5J7L_041
NA
J3_5KCR_0071/1A/1306:1309,
1/1A/1605:1611,
1/1A/1620:1622
No text annotation
homologous
J3_5J7L_042
NA
J3_5KCR_0081/1A/1344:1349,
1/1A/1382:1385,
1/1A/1402:1403
No text annotation
homologous
J3_5J7L_043
NA
J3_5KCR_0281/1A/1424:1429,
1/1A/1564:1565,
1/1A/1568:1574
No text annotation
homologous
J3_5J7L_069
NA
J3_5KCR_0091/1A/2091:2093,
1/1A/2196:2200,
1/1A/2223:2228
Kink-turn 3-way junction
homologous
J3_5J7L_044
NA
J3_5KCR_0291/1A/2282:2284,
1/1A/2384:2395,
1/1A/2421:2427
No text annotation
homologous
J3_5J7L_070
NA
J3_5KCR_0101/1A/2295:2297,
1/1A/2321:2323,
1/1A/2332:2337
No text annotation
homologous
J3_5J7L_045
NA
J3_5KCR_0301/1A/2295:2299,
1/1A/2317:2323,
1/1A/2332:2337
No text annotation
homologous
J3_5J7L_071
NA
J3_5KCR_0111/1A/2517:2520,
1/1A/2545:2547,
1/1A/2561:2567
No text annotation
homologous
J3_5J7L_046
NA
J3_5KCR_0131/1A/2812:2815,
1/1A/2831:2836,
1/1A/2882:2888
No text annotation
homologous
J3_5J7L_048
NA
J3_5KCR_0141/1B/10:16,
1/1B/68:70,
1/1B/106:110
No text annotation
homologous
J3_5J7L_049
NA
J3_5KCR_0151/1a/46:47,
1/1a/361:367,
1/1a/393:395
No text annotation
homologous
J3_5J7L_001
NA
J3_5KCR_0311/1a/46:47,
1/1a/361:369,
1/1a/392:395
No text annotation
J3_5KCR_0321/1a/46:52,
1/1a/359:369,
1/1a/392:395
No text annotation
J3_5KCR_0161/1a/586:588,
1/1a/651:654,
1/1a/754:755
No text annotation
homologous
J3_5J7L_002
NA
J3_5KCR_0331/1a/586:588,
1/1a/651:655,
1/1a/751:755
No text annotation
homologous
J3_5J7L_051
NA
J3_5KCR_0381/1a/672:673,
1/1a/717:725,
1/1a/732:734
No text annotation
homologous
J3_5J7L_003
NA
J3_5KCR_0171/1a/826:829,
1/1a/857:861,
1/1a/868:874
No text annotation
homologous
J3_5J7L_004
NA
J3_5KCR_0351/1a/936:939,
1/1a/1344:1350,
1/1a/1372:1379
No text annotation
homologous
J3_4LFB_002
J3_85722.1
J3_5KCR_0181/1a/943:946,
1/1a/1235:1237,
1/1a/1337:1340
No text annotation
homologous
J3_5J7L_005
NA
J3_5KCR_0191/1a/955:962,
1/1a/973:984,
1/1a/1221:1225
No text annotation
homologous
J3_5J7L_006
NA
J3_5KCR_0201/1a/990:993,
1/1a/1045:1047,
1/1a/1210:1215
No text annotation
homologous
J3_5J7L_007
NA
J3_5KCR_0361/1a/990:997,
1/1a/1044:1047,
1/1a/1210:1215
No text annotation
homologous
J3_5J7L_053
NA
J3_5KCR_0211/1a/1063:1068,
1/1a/1107:1113,
1/1a/1187:1193
No text annotation
homologous
J3_5J7L_008
NA
J3_5KCR_0221/1a/1073:1074,
1/1a/1083:1087,
1/1a/1098:1102
No text annotation
homologous
J3_5J7L_009
NA
J3_5KCR_0231/1a/1116:1118,
1/1a/1155:1158,
1/1a/1181:1184
No text annotation
homologous
J3_5J7L_010
NA
J3_5KCR_0371/1a/1116:1118,
1/1a/1155:1161,
1/1a/1175:1184
No text annotation
homologous
J3_4LFB_018
J3_40706.1
J3_5KCR_0241/1a/1237:1241,
1/1a/1296:1303,
1/1a/1334:1337
No text annotation
homologous
J3_5J7L_011
NA
J4_5KCR_0011/1A/268:269,
1/1A/370:375,
1/1A/399:406,
1/1A/421:424
No text annotation
homologous
J4_5J7L_018
NA
J4_5KCR_0021/1A/297:301,
1/1A/316:319,
1/1A/323:325,
1/1A/337:341
No text annotation
homologous
J4_5J7L_019
NA
J4_5KCR_0031/1A/601:604,
1/1A/624:628,
1/1A/635:638,
1/1A/650:656
No text annotation
homologous
J4_5J7L_020
NA
J4_5KCR_0041/1A/1270:1276,
1/1A/1294:1295,
1/1A/1645:1648,
1/1A/2009:2010
No text annotation
homologous
J4_5J7L_021
NA
J4_5KCR_0051/1A/1310:1314,
1/1A/1338:1343,
1/1A/1404:1405,
1/1A/1597:1604
No text annotation
homologous
J4_5J7L_022
NA
J4_5KCR_0061/1A/1313:1314,
1/1A/1338:1343,
1/1A/1404:1405,
1/1A/1597:1603
No text annotation
homologous
J4_5J7L_023
NA
J4_5KCR_0071/1A/1444:1445,
1/1A/1466:1467,
1/1A/1525:1526,
1/1A/1546:1547
No text annotation
homologous
J4_5J7L_024
NA
J4_5KCR_0081/1A/1772:1776,
1/1A/1788:1792,
1/1A/1827:1830,
1/1A/1975:1979
No text annotation
homologous
J4_5J7L_025
NA
J4_5KCR_0091/1A/1833:1835,
1/1A/1905:1906,
1/1A/1924:1933,
1/1A/1967:1972
No text annotation
homologous
J4_5J7L_026
NA
J4_5KCR_0101/1A/2285:2289,
1/1A/2343:2347,
1/1A/2370:2372,
1/1A/2381:2383
No text annotation
homologous
J4_5J7L_027
NA
J4_5KCR_0111/1A/2643:2646,
1/1A/2674:2676,
1/1A/2731:2735,
1/1A/2769:2771
No text annotation
homologous
J4_5J7L_028
NA
J4_5KCR_0121/1a/115:122,
1/1a/239:240,
1/1a/286:289,
1/1a/311:312
No text annotation
homologous
J4_5J7L_001
NA
J4_5KCR_0141/1a/569:577,
1/1a/764:769,
1/1a/810:821,
1/1a/879:881
No text annotation
J5_5KCR_0011/1A/47:54,
1/1A/116:121,
1/1A/130:131,
1/1A/148:150,
1/1A/176:178
No text annotation
homologous
J5_5J7L_013
NA
J5_5KCR_0021/1A/531:533,
1/1A/560:564,
1/1A/577:579,
1/1A/1261:1262,
1/1A/2017:2018
No text annotation
homologous
J5_5J7L_014
NA
J5_5KCR_0031/1A/584:589,
1/1A/668:671,
1/1A/809:812,
1/1A/1195:1196,
1/1A/1250:1256
No text annotation
homologous
J5_5J7L_015
NA
J5_5KCR_0041/1A/1674:1682,
1/1A/1706:1707,
1/1A/1751:1752,
1/1A/1756:1764,
1/1A/1988:1990
No text annotation
homologous
J5_5J7L_016
NA
J5_5KCR_0051/1A/2057:2064,
1/1A/2446:2453,
1/1A/2500:2506,
1/1A/2583:2588,
1/1A/2606:2611
No text annotation
J5_5KCR_0061/1A/2074:2077,
1/1A/2243:2246,
1/1A/2258:2259,
1/1A/2281:2282,
1/1A/2427:2435
No text annotation
J5_5KCR_0071/1a/36:39,
1/1a/403:406,
1/1a/436:440,
1/1a/497:500,
1/1a/545:548
No text annotation
homologous
J5_5J7L_001
NA
J5_5KCR_0081/1a/36:39,
1/1a/403:406,
1/1a/436:442,
1/1a/492:500,
1/1a/545:548
No text annotation
homologous
J5_5J7L_002
NA
J5_5KCR_0091/1a/58:61,
1/1a/106:113,
1/1a/314:316,
1/1a/337:339,
1/1a/350:354
No text annotation
homologous
J5_5J7L_003
NA
J6_5KCR_0011/1A/45:46,
1/1A/179:183,
1/1A/214:224,
1/1A/231:235,
1/1A/262:266,
1/1A/426:433
No text annotation
J6_5KCR_0021/1A/2074:2077,
1/1A/2243:2246,
1/1A/2258:2259,
1/1A/2281:2284,
1/1A/2384:2395,
1/1A/2421:2435
No text annotation
J7_5KCR_0011/1A/8:15,
1/1A/525:531,
1/1A/2018:2023,
1/1A/2040:2043,
1/1A/2625:2630,
1/1A/2788:2789,
1/1A/2894:2895
No text annotation
J7_5KCR_0021/1A/817:822,
1/1A/835:837,
1/1A/942:946,
1/1A/971:976,
1/1A/987:991,
1/1A/1163:1164,
1/1A/1185:1190
No text annotation

Problematic loops

#loop idProblemSequence
J3_5KCR_005No text annotation
J3_5KCR_012No text annotation
J3_5KCR_034No text annotation
J4_5KCR_013No text annotation
J5_5KCR_010No text annotation

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