HL_5KCR_028

3D structure

PDB id

5KCR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Avilamycin C, mRNA and P-site tRNA at 3.6A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUUAGAAGCAG

Length

11 nucleotides

Bulged bases

5KCR|1|1A|A|1070

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5KCR_028 not in the Motif Atlas

Homologous match to HL_5J7L_161

Geometric discrepancy: 0.0911

The information below is about HL_5J7L_161

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19210.3

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

5KCR|1|1A|C|1064
5KCR|1|1A|U|1065
5KCR|1|1A|U|1066
5KCR|1|1A|A|1067
5KCR|1|1A|G|1068
5KCR|1|1A|A|1069
5KCR|1|1A|A|1070
5KCR|1|1A|G|1071
5KCR|1|1A|C|1072
5KCR|1|1A|A|1073
5KCR|1|1A|G|1074

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1K

50S ribosomal protein L11