HL_5KCR_044

3D structure

PDB id

5KCR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Avilamycin C, mRNA and P-site tRNA at 3.6A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGAAG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5KCR_044 not in the Motif Atlas

Homologous match to HL_5J7L_177

Geometric discrepancy: 0.0863

The information below is about HL_5J7L_177

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_80709.3

Basepair signature

cWW-F-F-F

Number of instances in this motif group

11

Unit IDs

5KCR|1|1A|C|1752
5KCR|1|1A|G|1753
5KCR|1|1A|A|1754
5KCR|1|1A|A|1755
5KCR|1|1A|G|1756

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1T

50S ribosomal protein L19