HL_5KCR_050

3D structure

PDB id

5KCR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Avilamycin C, mRNA and P-site tRNA at 3.6A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GUG(6MZ)AGAUGC

Length

10 nucleotides

Bulged bases

5KCR|1|1A|A|2031, 5KCR|1|1A|G|2032

QA status

Modified nucleotides: 6MZ

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5KCR_050 not in the Motif Atlas

Homologous match to HL_5J7L_183

Geometric discrepancy: 0.0544

The information below is about HL_5J7L_183

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61996.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

5KCR|1|1A|G|2027
5KCR|1|1A|U|2028
5KCR|1|1A|G|2029
5KCR|1|1A|6MZ|2030
5KCR|1|1A|A|2031
5KCR|1|1A|G|2032
5KCR|1|1A|A|2033
5KCR|1|1A|U|2034
5KCR|1|1A|G|2035
5KCR|1|1A|C|2036

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 15

50S ribosomal protein L32

Chain 1E

50S ribosomal protein L3

Chain 1V

50S ribosomal protein L21