HL_5KCR_070

3D structure

PDB id

5KCR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Avilamycin C, mRNA and P-site tRNA at 3.6A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CAUGCCG

Length

7 nucleotides

Bulged bases

5KCR|1|1B|G|41

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5KCR_070 not in the Motif Atlas

Geometric match to HL_5J7L_203

Geometric discrepancy: 0.0629

The information below is about HL_5J7L_203

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47787.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

10

Unit IDs

5KCR|1|1B|C|38
5KCR|1|1B|A|39
5KCR|1|1B|U|40
5KCR|1|1B|G|41
5KCR|1|1B|C|42
5KCR|1|1B|C|43
5KCR|1|1B|G|44

Current chains

Chain 1B

5S Ribosomal RNA

Nearby chains

Chain 1A

Large subunit ribosomal RNA; LSU rRNA

Chain 1G

50S ribosomal protein L5

Chain 1S

50S ribosomal protein L18