HL_5KCR_072

3D structure

PDB id

5KCR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Avilamycin C, mRNA and P-site tRNA at 3.6A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UUUGAUCAUGG

Length

11 nucleotides

Bulged bases

5KCR|1|1a|U|14

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5KCR_072 not in the Motif Atlas

Homologous match to HL_4LFB_001

Geometric discrepancy: 0.1387

The information below is about HL_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_73535.1

Basepair signature

cWW-tHW-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

5KCR|1|1a|U|12
5KCR|1|1a|U|13
5KCR|1|1a|U|14
5KCR|1|1a|G|15
5KCR|1|1a|A|16
5KCR|1|1a|U|17
5KCR|1|1a|C|18
5KCR|1|1a|A|19
5KCR|1|1a|U|20
5KCR|1|1a|G|21
5KCR|1|1a|G|22

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1e

30S ribosomal protein S5

Chain 1l

30S ribosomal protein S12