HL_5KCR_083

3D structure

PDB id

5KCR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Avilamycin C, mRNA and P-site tRNA at 3.6A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GUUAAUACC

Length

9 nucleotides

Bulged bases

5KCR|1|1a|U|467

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5KCR_083 not in the Motif Atlas

Homologous match to HL_5J7L_012

Geometric discrepancy: 0.1446

The information below is about HL_5J7L_012

Detailed Annotation

GNRA wlth extra near cWW

Broad Annotation

GNRA wlth extra near cWW

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

5KCR|1|1a|G|462
5KCR|1|1a|U|463
5KCR|1|1a|U|464
5KCR|1|1a|A|465
5KCR|1|1a|A|466
5KCR|1|1a|U|467
5KCR|1|1a|A|468
5KCR|1|1a|C|469
5KCR|1|1a|C|470

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains