HL_5KCR_104
3D structure
- PDB id
- 5KCR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Avilamycin C, mRNA and P-site tRNA at 3.6A resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CUUGAGGUG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5KCR_104 not in the Motif Atlas
- Homologous match to HL_3TUP_002
- Geometric discrepancy: 0.1392
- The information below is about HL_3TUP_002
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_81376.2
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 42
Unit IDs
5KCR|1|1x|C|32
5KCR|1|1x|U|33
5KCR|1|1x|U|34
5KCR|1|1x|G|35
5KCR|1|1x|A|36
5KCR|1|1x|G|37
5KCR|1|1x|G|38
5KCR|1|1x|U|39
5KCR|1|1x|G|40
Current chains
- Chain 1x
- P-site tRNA
Nearby chains
- Chain 1A
- Large subunit ribosomal RNA; LSU rRNA
- Chain 1a
- Small subunit ribosomal RNA; SSU rRNA
- Chain 1i
- 30S ribosomal protein S9
- Chain 1v
- mRNA
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