HL_5KCR_106

3D structure

PDB id

5KCR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Avilamycin C, mRNA and P-site tRNA at 3.6A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GUUCAAGUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5KCR_106 not in the Motif Atlas

Homologous match to HL_4LCK_003

Geometric discrepancy: 0.1526

The information below is about HL_4LCK_003

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.2

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

135

Unit IDs

5KCR|1|1x|G|64
5KCR|1|1x|U|65
5KCR|1|1x|U|66
5KCR|1|1x|C|67
5KCR|1|1x|A|68
5KCR|1|1x|A|69
5KCR|1|1x|G|70
5KCR|1|1x|U|71
5KCR|1|1x|C|72

Current chains

Chain 1x

P-site tRNA

Nearby chains

Chain 1A

Large subunit ribosomal RNA; LSU rRNA

Chain 1G

50S ribosomal protein L5

Chain 1Q

50S ribosomal protein L16