HL_5KCR_114

3D structure

PDB id

5KCR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Avilamycin C, mRNA and P-site tRNA at 3.6A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GCUUAUGC

Length

8 nucleotides

Bulged bases

5KCR|1|1A|U|1174, 5KCR|1|1A|A|1175

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5KCR_114 not in the Motif Atlas

Homologous match to HL_5J7L_163

Geometric discrepancy: 0.3204

The information below is about HL_5J7L_163

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

5KCR|1|1A|G|1171
5KCR|1|1A|C|1172
5KCR|1|1A|U|1173
5KCR|1|1A|U|1174
5KCR|1|1A|A|1175
5KCR|1|1A|U|1176
5KCR|1|1A|G|1177
5KCR|1|1A|C|1178

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1P

50S ribosomal protein L15